Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00253 ATGAGTGAGATGGATTATGAGCTAGTTGATCACTCCTTCTACCATCAACTCCATGAATATAGCTTAGAAAATGCATTTCCATTCCAAACAGAATATGATCTCTTATCTCCAAATACCTCACAAGATGCAATGCTCGACCAAGAGTTCATTGAAGGATTACTGCAGCAGCCATGTACAGAGCTTCTGGACTTTGATTTCATGGATCCTAATGTCTCAGTGGGGATAGAAACAGAATTGAGCCAAGAAGTTACCACTCCGAGGTGCCAGGAAAATGGAGATCCTTGTTTAATGGGTATTCAAGCGGCTCTAATGGAAGAAAGCAGTTTAGCTGATCTCTTGCTGACAGGAGCTGAAGCTGTTGAAGCACAGAATTGGGCTCTAGCCTCAGACATCATTAAAAAGATTAACCACGACTTATGTGTAGAAAATGAAGGAGATAATTTGTTGAACGGGTTGGCTTTTTTCTTTAATCAAGGTTTGCATTATAAAACCATAAATGCCCTTGCAGTGAACTATGAACCCATTTCTTCTCAGAAAGACACTTTCTTCGCTTTTCAGAGCCTCCAAGAGCTCTCTCCCTATGTGAAATTTGCCCATTTCACTGCAAACCAAGCAATATTTGAAGCAACTGAAGGTGATCAAGAGGTCCATGTCATTGATTTTGACATCATGGATGGGATCCAGTGGCCGCCATTGATGGTTGACCTGGCAATGAGGAAGAACACTAACCTTAGAGTGACAGCCATCACATTGGACCATCAAAGTGTCGCCGGCGTCCAACAAACAGGAAGAAGGTTACAAGAGTTTGCTGACTCTATCAATTTCTCATTCACGTTTGATCAAATAATGATTACTGGGGACGATGATTTTAGAAGAATCACATTGGGTCCTGCACTTGTAGTCAATTGTATGATACACCAGTGGACGACCAACAGGAGTTTCTCAATGATCAAAACTTTCCTGGATGGTGTAAGCAAATTGTCATCTAAGCTTGTTGTTTTAGTAGAAGATGAACTGTTCAATTTTTCTAGGCTCCAATCTATGTCCTTTGTAGAGTTCTTCCATGAGGCTTTGCACCATTATACAGCAATTTCTGATTCACTTGCAAGTAGTTTCTGTGATGACTACAAGATGAAGTTGATAGAAAAAGAAGTTCTGGGGATTAGGATTATAGAAACTGTGAGGCAGTTTCCTTGTGAAGGGGAGGAGAGAACTTTGTGGGAAGAAGGATTGAACTCCTTGAAAGGGTTTAAACGAGTTCCTGTGAGTAACTGCAATATTTCTCAAGCCAAGTTGTTGGTGAGCCTCTTCGGTGGCGGGTACTGGGTGCAACATGTTAAGGGCAGATTGTCTCTGTGTTGGAAGTCTAGGCCTCTAACAGCGGCTTCAGTTTGGGTTCCGACAAGAAGTTAA 1413 0.4168 MSEMDYELVDHSFYHQLHEYSLENAFPFQTEYDLLSPNTSQDAMLDQEFIEGLLQQPCTELLDFDFMDPNVSVGIETELSQEVTTPRCQENGDPCLMGIQAALMEESSLADLLLTGAEAVEAQNWALASDIIKKINHDLCVENEGDNLLNGLAFFFNQGLHYKTINALAVNYEPISSQKDTFFAFQSLQELSPYVKFAHFTANQAIFEATEGDQEVHVIDFDIMDGIQWPPLMVDLAMRKNTNLRVTAITLDHQSVAGVQQTGRRLQEFADSINFSFTFDQIMITGDDDFRRITLGPALVVNCMIHQWTTNRSFSMIKTFLDGVSKLSSKLVVLVEDELFNFSRLQSMSFVEFFHEALHHYTAISDSLASSFCDDYKMKLIEKEVLGIRIIETVRQFPCEGEERTLWEEGLNSLKGFKRVPVSNCNISQAKLLVSLFGGGYWVQHVKGRLSLCWKSRPLTAASVWVPTRS 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00253 470 ProSiteProfiles GRAS family profile. 100 466 IPR005202 -
Accr12g00253 470 Pfam GRAS domain family 110 465 IPR005202 -
Accr12g00253 470 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 104 461 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00253 Accr-Chr12 2301256 2302668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00253 188 465 GRAS Transcription Factor Family AT1G55580 34.426 2.16e-42 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Accr12g00253 GRAS 5.8e-74 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00253 - - gmx:100804613 563.533