Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00251 ATGTATGCTTCTTCTACTTCCTCTAGCTCCCTGCTTCTCCAGGATCTTCTTGGGGATTTCCATTCCAGAAGGTTGCTCCTTTTCCACAACCCACTAATTAACTCACAGGCCAATCCTCCGGCCTCCTTAAACACCCACAATTCGACGGGCAACTACCTAGGAAATGTCAATTTCGATGCGAATGTTGTCATGGTGCTCTCTGTGTTGTTGTGTGCTCTTATTTGCTCGCTTGGCTTGAACTCCATCATAAGATGTGCCTTGAGGTGTTCCAATCTGGTGGTCACCGTCGAGCCCGCCGCCGCCGGGAACAATCCTCCGGCTAGATTGGCCAACACCGGAGTGAAGAAGAAGGCTCTCAAGACTTTCCCCACTGTAAACTACTCCGCCGAGCTGAAGCTACCAGGTTTGGACACAGAGTGTGTGATATGCTTGTCAGAGTTCAGCAATGGCGAACGTGTCAGAATTTTGCCAAAGTGCAACCATGGCTTCCATGTGAAGTGCATTGACAAGTGGCTGAGCTCACACTCGTCTTGTCCTAAGTGCAGGCAGTGCCTAATTCAAACTTGCCAGAAGATTGTTGGATGCACCACCCAGGCTAGCTCCTCCCAGCCACCTGAAACCATTGTTAGGATTCCGTCTCTTGAACCAGAAGGTTTGGTCCGTAACTACAGGGAATTAAGCACTTAA 687 0.4964 MYASSTSSSSLLLQDLLGDFHSRRLLLFHNPLINSQANPPASLNTHNSTGNYLGNVNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNLVVTVEPAAAGNNPPARLANTGVKKKALKTFPTVNYSAELKLPGLDTECVICLSEFSNGERVRILPKCNHGFHVKCIDKWLSSHSSCPKCRQCLIQTCQKIVGCTTQASSSQPPETIVRIPSLEPEGLVRNYRELST 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00251 228 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Accr12g00251 228 SMART ring_2 140 181 IPR001841 -
Accr12g00251 228 CDD RING-H2_EL5-like 139 182 - -
Accr12g00251 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 187 IPR013083 -
Accr12g00251 228 FunFam RING-H2 finger protein ATL73 103 187 - -
Accr12g00251 228 Pfam Ring finger domain 139 182 IPR001841 -
Accr12g00251 228 SUPERFAMILY RING/U-box 118 187 - -
Accr12g00251 228 PANTHER RING-H2 FINGER PROTEIN ATL78 15 219 IPR044602 GO:0016567|GO:0016740
Accr12g00251 228 Coils Coil 223 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00251 Accr-Chr12 2264022 2264708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00251 32 186 C3H Transcription Factor Family AT3G10910 47.799 7.77e-45 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00251 K19040 - qsa:O6P43_023336 320.857