Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00250 ATGAGTACCATGTATGCTTCTTCTACTTCCTCTAGCTCCCTGCTTCTCCAGGATCTTCTTGGGGATTTCCATTCCAGAAGGTTGCTCCTTTTCCACAACCCACTAATTAACTCACAGGCCAATCCTCCGGCCTCCTTAAACACCCACAATTCGACGGGCAACTACCTAGGAAATGTCAATTTCGATGCGAATGTTGTCATGGTGCTCTCTGTGTTGTTGTGTGCTCTTATTTGCTCGCTTGGCTTGAACTCCATCATAAGATGTGCCTTGAGGTGTTCCAATCTGGTGGTCACCGTCGAGCCCGCCGCCGCCGGGAACAATCCTCCGGCTAGATTGGCCAACACCGGAGTGAAGAAGAAGGCTCTCAAGACTTTCCCCACTGTAAACTACTCCGCCGAGCTGAAGCTACCAGGTTTGGACACAGAGTGTGTGATATGCTTGTCAGAGTTCAGCAATGGCGAACGTGTCAGAATTTTGCCAAAGTGCAACCATGGCTTCCATGTGAAGTGCATTGACAAGTGGCTGAGCTCACACTCGTCTTGTCCTAAGTGCAGGCAGTGCCTAATTCAAACTTGCCAGAAGATTGTTGGATGCACCACCCAGGCTAGCTCCTCCCAGCCACCTGAAACCATTGTTAGGATTCCGTCTCTTGAACCAGAAGGTTTGGTCCGTAACTACAGGGAATTAAGCACTTAA 696 0.4957 MSTMYASSTSSSSLLLQDLLGDFHSRRLLLFHNPLINSQANPPASLNTHNSTGNYLGNVNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNLVVTVEPAAAGNNPPARLANTGVKKKALKTFPTVNYSAELKLPGLDTECVICLSEFSNGERVRILPKCNHGFHVKCIDKWLSSHSSCPKCRQCLIQTCQKIVGCTTQASSSQPPETIVRIPSLEPEGLVRNYRELST 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00250 231 CDD RING-H2_EL5-like 142 185 - -
Accr12g00250 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 190 IPR013083 -
Accr12g00250 231 PANTHER RING-H2 FINGER PROTEIN ATL78 18 222 IPR044602 GO:0016567|GO:0016740
Accr12g00250 231 FunFam RING-H2 finger protein ATL73 106 190 - -
Accr12g00250 231 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Accr12g00250 231 SMART ring_2 143 184 IPR001841 -
Accr12g00250 231 SUPERFAMILY RING/U-box 121 190 - -
Accr12g00250 231 Pfam Ring finger domain 142 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00250 Accr-Chr12 2264022 2264717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00250 35 189 C3H Transcription Factor Family AT3G10910 47.799 6.82e-45 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00250 K19040 - qsa:O6P43_023336 320.857