Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00248 ATGCTGGAAACCTCGAACTTATCAGAAAATACCCCAGCTCCGGTCCAGGACCGCCCCGTGGAGGACGGAGGTGGCAGTGGGCCTGACTCCGATGGCCTCCAAGAGCAACGGGGCCTCGCCGACCAGGAACTTGACCGGAATTCCGCCGGTCACCGCTGGCCCCGAGAAGAGACATTGGCTTTGCTCAAAATAAGGTCTGAGATGGACATTGCTTTCAGGGATATCAGCCCCAAAGGTCCTCTCTGGCAACAGGTTTCGAGGAGATTGGCTGAGCTAGGATACAATAGGAGTGCAAAAAAATGTAAGGAGAAGTTCGAAAACATTTACAAGTACCATAGAAGGACCAAGGAAGGCCGTTATGGCCGACCTAACGGAAAGACTTACCGTTTCTTTGAGCAACTAGAAGCTCTTGACGCCAACCTCCTCCTCCCACCACCTCCAACTTCAGCCGAAAAAGATCACACACCAACCTCACCTGATGTTGTTCATCATGCCATGCCCTGCTCTGCTCGATTCCCTAGTAGTGCAAATAGTGATTCTACTACTTCTTTATCCTATGAAGAGATACCCAAAAAGAAGAGTAAGCTGAATAAGTTTTTCCAGGGCTTGATGAAGCAAGTAATAGAGAAGCAAGAGGCTTTACAGAAGAATTTTGTGGAGGTGTTGGAAAAATGTGAGCAAGATCGAATAGCGAGGGAGGAAGCATGGAGGACTCAAGAATTAGCTCGGCTTAACAAGGAGCGTGAGCTCTTGGCTCAAGAAAGATCTGCCGCTGCAGCTAAAGATGCTGCGTTGATTGCCTTTCTGAAGAAGATGACAGAACAACCACCATGGCCGGTGCAGCTGCCGGAGAATATTCCGGTTGACCAGAACATGATTCCAGATGATATAGATAAGAACAATCAAGAAAAAGTCAATGGAGGTTGTACCGTTAGCGTTACGGATAAGCAAGAATGTGGAAATAATGTTGGGAATTTTATCCAGATGAGTTCATCCCGTTGGCCTAAAGAAGAAGTGGAAGCTCTGATTGTATTGAGGACAAACATGGATGCAGAATATGAAGGAGGAAATAATGGGACTAAGGGACCTCTGTGGGAAGAAATATCTTCGGCAATGAAAAAGATTGGGTACGATCGCAGTGCAAAGAGATGCAAAGAGAAATGGGAGAACATAAACAAGTACTTTAAGAGGATGAAGCAGAAAAACAAGAGAAAGCCTGAGGATTCAAAGACGTGCCCATATTTTCACCAGCTAGATGAACTATACAGTAAGAAACCCAGGAAGGTACAAGAATCAGGTGCTTCTGGGAACGAGTTGAAGGCGGAGGAGCTATTAATGCACATAATGAGCGGTCAAGAAGAGCGACAATCATCCGAAGATACCGGCAGAGAGAAGACGAACCAGATTGAAGGAGATAAGGAAGATGTGGATCAGACGGTAGACAATAGTAATTCACCAGCAATCATGGGGTGA 1473 0.4637 MLETSNLSENTPAPVQDRPVEDGGGSGPDSDGLQEQRGLADQELDRNSAGHRWPREETLALLKIRSEMDIAFRDISPKGPLWQQVSRRLAELGYNRSAKKCKEKFENIYKYHRRTKEGRYGRPNGKTYRFFEQLEALDANLLLPPPPTSAEKDHTPTSPDVVHHAMPCSARFPSSANSDSTTSLSYEEIPKKKSKLNKFFQGLMKQVIEKQEALQKNFVEVLEKCEQDRIAREEAWRTQELARLNKERELLAQERSAAAAKDAALIAFLKKMTEQPPWPVQLPENIPVDQNMIPDDIDKNNQEKVNGGCTVSVTDKQECGNNVGNFIQMSSSRWPKEEVEALIVLRTNMDAEYEGGNNGTKGPLWEEISSAMKKIGYDRSAKRCKEKWENINKYFKRMKQKNKRKPEDSKTCPYFHQLDELYSKKPRKVQESGASGNELKAEELLMHIMSGQEERQSSEDTGREKTNQIEGDKEDVDQTVDNSNSPAIMG 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00248 490 Pfam Myb/SANT-like DNA-binding domain 332 421 IPR044822 -
Accr12g00248 490 Pfam Myb/SANT-like DNA-binding domain 51 137 IPR044822 -
Accr12g00248 490 MobiDBLite consensus disorder prediction 1 52 - -
Accr12g00248 490 Gene3D - 53 114 - -
Accr12g00248 490 Gene3D - 334 397 - -
Accr12g00248 490 ProSiteProfiles Myb-like domain profile. 52 109 IPR001005 -
Accr12g00248 490 FunFam Trihelix transcription factor GT-2 53 114 - -
Accr12g00248 490 PANTHER FI21293P1 22 474 - -
Accr12g00248 490 CDD GT1 332 399 - -
Accr12g00248 490 FunFam Trihelix transcription factor GT-2 334 397 - -
Accr12g00248 490 ProSiteProfiles Myb-like domain profile. 332 392 IPR001005 -
Accr12g00248 490 SMART sant 330 394 IPR001005 -
Accr12g00248 490 SMART sant 49 111 IPR001005 -
Accr12g00248 490 CDD GT1 52 116 - -
Accr12g00248 490 MobiDBLite consensus disorder prediction 447 479 - -
Accr12g00248 490 MobiDBLite consensus disorder prediction 36 52 - -
Accr12g00248 490 Coils Coil 241 261 - -
Accr12g00248 490 MobiDBLite consensus disorder prediction 425 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00248 Accr-Chr12 2254363 2256146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00248 48 425 Trihelix Transcription Factor Family AT1G76890 44.615 1.20e-116 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Accr12g00248 Myb_DNA-bind_4 1.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00248 - - qsa:O6P43_030370 522.702