Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00241 ATGGACTTGGACGATTTCCGATCCATTTTGGAGACTGCGGGCGTTGACGTGTGGACTTTCATCGACACCGCTATCACAGTCGCTTCCTTGGATTTCGGCAATGACTTGAAGTATCGCCGGGATGGAATCGTTGAACGCCTCTATGCGGCTACTTCCGCTCCTGCTTCCTGTCGGAATTGCGAGCCCAATCACCTCAGGTCTAACGGCCTCGGAATCGGCGTTCCAATCAAGGAGCGTAGCAGTCCTCTGCCCGACAAAAGTCGTGCCTCGCCTGCAACGCCGCAGTCCTTGGGTAAAGACGACAACGAAGACGACGAGGAGATAGATCCTTACGGAGGTTTGTTCGATGATGAGCAGAAGAAGATTCTGGAGATTAAAGAGCTACTTGAAGACCCTAACCAGTCTGAAGAATCATTGGTGGACTTGCTACAAAGTCTTGCAGACATGGATATCACATTCCAAGCGCTGAAGGACACTGACATTGGTAGGCACGTGAATCGTTTGCGAAAGCACTCGTCCAATGATGTTCGGAGATTGGTGAAGCTCCTTGTCAGGAAATGGAAAGACATTGTGGATGAATGGGTGAGGTTGAATCCACCAGCTGAGCACGCCTCGCTCATGGCTGATGGGGACTCGCCTCCGCCCAAAACCACCGCCCTGAACGGCTATCATCAGATTCCTGATTTTGCCTACTCACCAAATCCACATAATGGTAGTTCTGGGTCGGATCGGAACAATTCAGAGGCTGAGTTAAAACCAAAACCTATTCCCCGGAAAGAAGCTCCACCAAAACCAGCGCCATCTGCCTTCATGTCTACTTCTGCTCCGCCTCAAAACAGGCAGAGAGAACAGAGGGAAAGCAATTTTGACGCGGAGAGACTTGCTTCGGCAAGAAGGCGGCTTCAAGAGAACTACAAGGAAGCGGAAAATGCCAAAAAGCAAAGAACCATTCAGGTGATGGACATCCACGAGCTACCGAAACCAAAAGCCAAGAACGCCTTCTTTGCCAAGAACAAAGGCGGCGGCGGTTCTCAGGGAAGGCACTGGTGA 1050 0.5105 MDLDDFRSILETAGVDVWTFIDTAITVASLDFGNDLKYRRDGIVERLYAATSAPASCRNCEPNHLRSNGLGIGVPIKERSSPLPDKSRASPATPQSLGKDDNEDDEEIDPYGGLFDDEQKKILEIKELLEDPNQSEESLVDLLQSLADMDITFQALKDTDIGRHVNRLRKHSSNDVRRLVKLLVRKWKDIVDEWVRLNPPAEHASLMADGDSPPPKTTALNGYHQIPDFAYSPNPHNGSSGSDRNNSEAELKPKPIPRKEAPPKPAPSAFMSTSAPPQNRQREQRESNFDAERLASARRRLQENYKEAENAKKQRTIQVMDIHELPKPKAKNAFFAKNKGGGGSQGRHW 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00241 349 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 120 201 IPR035441 -
Accr12g00241 349 Coils Coil 291 318 - -
Accr12g00241 349 MobiDBLite consensus disorder prediction 232 246 - -
Accr12g00241 349 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 116 204 IPR035441 -
Accr12g00241 349 MobiDBLite consensus disorder prediction 203 296 - -
Accr12g00241 349 ProSiteProfiles TFIIS N-terminal domain profile. 117 194 IPR017923 -
Accr12g00241 349 SMART TFS2_5 122 193 IPR003617 GO:0005634
Accr12g00241 349 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 349 IPR044790 -
Accr12g00241 349 MobiDBLite consensus disorder prediction 330 349 - -
Accr12g00241 349 MobiDBLite consensus disorder prediction 69 113 - -
Accr12g00241 349 Pfam TFIIS helical bundle-like domain 142 191 IPR017923 -
Accr12g00241 349 CDD TFIIS_I 119 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00241 Accr-Chr12 2202427 2204454 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Accr12g00241 Med26 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00241 - - aip:107622503 508.834