Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00237 ATGCCAGTGCCAATGGCAATTGCTCTCTCTGGTCAATTGCTTCTTGGACAACCCGTAATGGTCAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCTAATGCTTCCACCGGAGCTGCAGGTGTAGCAGGACCATATGGAGCAGCAGACAGGAAACTTTATGTGGGAAACCTTCATTTCAACATGACAGAGAGTCAGTTGAGGGAAATCTTTGAGCCGTTTGGTTCAGTGGAGCTTGTACAACTGCCTACTGACCTGGAGACAGGACATTGCAAGGGTTTTGGCTTTATTCAATTTGCCCATCTTGAACATGCCAAAGCAGCTCAGAGTTTAAATGGAAAACTGGAGATTGCTGGTAGGACTATCAAGGTTTCATGTGTGACAGATCACATCGGGAGCCAAGACATAACTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCCTTAAATGCTCAATCTAGAGCATTGCTTATGCAGAAGCTGGATCGATCTGGCATTGCCACAAGCATTGCAGGGTCTGTTGGTGTGCCCATTGGGAATGGGTCAGTTCCTACTCAACAGTCTGTTAGTTTGCCTAGTGCTCCAGGTTTAATGCCCACATCAGCCCCCCCAACACAAATCATGCCTTCCCCTGTGGTAGAACCTGTAGGAAGCCCAAGCGAGTGTCTATTGTTGAAGAATATGTTTGATCCTACCACTGAGACGGAACCAGATTTTGATATTGACATTAAGGAGGATGTAGAAGAGGAATGTTCTAGATTTGGCCGGGTGAAGCATATTTATGTAGATAAAAGTGCAGGATTTGTGTATTTGCGTTTTGAATCAGAGGAAGCAGCAAGTGCTGCTCAACGAGCTATGCACATGAGATGGTTTGCACGCAGGTTGATTTCAGCCGTTTTCATGGAACCCCAGTTATATGAAGCCAAATTTAAAGTGGAAGCTTGA 954 0.4518 MPVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASTGAAGVAGPYGAADRKLYVGNLHFNMTESQLREIFEPFGSVELVQLPTDLETGHCKGFGFIQFAHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHIGSQDITAKSADFDDDEGGLALNAQSRALLMQKLDRSGIATSIAGSVGVPIGNGSVPTQQSVSLPSAPGLMPTSAPPTQIMPSPVVEPVGSPSECLLLKNMFDPTTETEPDFDIDIKEDVEEECSRFGRVKHIYVDKSAGFVYLRFESEEAASAAQRAMHMRWFARRLISAVFMEPQLYEAKFKVEA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00237 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Accr12g00237 317 Gene3D - 220 317 IPR012677 -
Accr12g00237 317 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 313 IPR006509 GO:0003723|GO:0005634|GO:0006397
Accr12g00237 317 SUPERFAMILY RNA-binding domain, RBD 50 305 IPR035979 GO:0003676
Accr12g00237 317 CDD RRM3_RBM39_like 223 304 - -
Accr12g00237 317 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 144 242 IPR029123 -
Accr12g00237 317 Gene3D - 44 141 IPR012677 -
Accr12g00237 317 FunFam Splicing factor CC1-like 35 140 - -
Accr12g00237 317 SMART rrm1_1 52 125 IPR000504 GO:0003723
Accr12g00237 317 SMART rrm1_1 225 301 IPR000504 GO:0003723
Accr12g00237 317 CDD RRM2_RBM23_RBM39 53 130 - -
Accr12g00237 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 123 IPR000504 GO:0003723
Accr12g00237 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 247 299 IPR000504 GO:0003723
Accr12g00237 317 NCBIfam splicing factor, CC1-like family 2 313 IPR006509 GO:0003723|GO:0005634|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00237 Accr-Chr12 2123797 2126534 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00237 31 124 Eukaryotic Initiation Factors Gene Family AT4G34110 35.789 1.40e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00237 K13091 - qsa:O6P43_030384 503.442