Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00236 ATGGACTTTGACGAATACGATTACTTGGAGAAGACAGTGGAGGAGCCGGAAGATCGAGATTCGAAGAAGAAGAAGGAGAGTAGCGAGAAGGGTGAAAGGAGTTACAGGAAGCGCGAGGTAGACGGGAATCTGGATGGTGAAGAAAAGAAGAGCAAGAAGATCAGAGGCGACGAGGAGAATGGGTCTAAGAAGGATCGTGATGACCGCGACAGAGAACGGTCTAGCCGCGAAAAGGAGCGCCATAGGAGCGGCAAGGAAAGGGACGGGGATAGAGATGGGGAGAGAGAGCAAGAGAGGAGTAATAGAGGGAAGGATAGGGAGAAGGAGAGAGACCGAGATAGGGATAAGGATAGGGAGAGGGATAGAGAAAGAAGAGGCAGAGAGAGGGAGAGGGATAGAGAAAGTGAGAGGGAGAAGAGAGAGAGGGATAAAGAGAGGGAGAGAAGGGAGAGGGAGGAGAGGGAGAGGTCCACGAGAAGCAGAAGTCGTTCTGATAGAGATAGAGAAAGAGAACGAGAACTGGAAATTACTCAAATTAGAGATAGCCGGAGAATCAGAGACAAGAAAGAGGCCGTCGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCATACCAGATACCCTTAAAGGCCACAGAGAGAGATGTTTATGAATTTTTCTCAAAAGCTGGGAAGGTGAGGGATGTCCGTCTGATCATGGATAGGAATTCAAGACGGTCTAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGCCAGTGCCAATGGCAATTGCTCTCTCTGGTCAATTGCTTCTTGGACAACCCGTAATGGTCAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCTAATGCTTCCACCGGAGCTGCAGGTGTAGCAGGACCATATGGAGCAGCAGACAGGAAACTTTATGTGGGAAACCTTCATTTCAACATGACAGAGAGTCAGTTGAGGGAAATCTTTGAGCCGTTTGGTTCAGTGGAGCTTGTACAACTGCCTACTGACCTGGAGACAGGACATTGCAAGGGTTTTGGCTTTATTCAATTTGCCCATCTTGAACATGCCAAAGCAGCTCAGAGTTTAAATGGAAAACTGGAGATTGCTGGTAGGACTATCAAGGTTTCATGTGTGACAGATCACATCGGGAGCCAAGACATAACTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCCTTAAATGCTCAATCTAGAGCATTGCTTATGCAGAAGCTGGATCGATCTGGCATTGCCACAAGCATTGCAGGGTCTGTTGGTGTGCCCATTGGGAATGGGTCAGTTCCTACTCAACAGTCTGTTAGTTTGCCTAGTGCTCCAGGTTTAATGCCCACATCAGCCCCCCCAACACAAATCATGCCTTCCCCTGTGGTAGAACCTGTAGGAAGCCCAAGCGAGTGTCTATTGTTGAAGAATATGTTTGATCCTACCACTGAGACGGAACCAGATTTTGATATTGACATTAAGGAGGATGTAGAAGAGGAATGTTCTAGATTTGGCCGGGTGAAGCATATTTATGTAGATAAAAGTGCAGGATTTGTGTATTTGCGTTTTGAATCAGAGGAAGCAGCAAGTGCTGCTCAACGAGCTATGCACATGAGATGGTTTGCACGCAGGTTGATTTCAGCCGTTTTCATGGAACCCCAGTTATATGAAGCCAAATTTAAAGTGGAAGCTTGA 1716 0.4662 MDFDEYDYLEKTVEEPEDRDSKKKKESSEKGERSYRKREVDGNLDGEEKKSKKIRGDEENGSKKDRDDRDRERSSREKERHRSGKERDGDRDGEREQERSNRGKDREKERDRDRDKDRERDRERRGRERERDRESEREKRERDKERERREREERERSTRSRSRSDRDRERERELEITQIRDSRRIRDKKEAVEPEADPERDQRTVFAYQIPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMPVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASTGAAGVAGPYGAADRKLYVGNLHFNMTESQLREIFEPFGSVELVQLPTDLETGHCKGFGFIQFAHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHIGSQDITAKSADFDDDEGGLALNAQSRALLMQKLDRSGIATSIAGSVGVPIGNGSVPTQQSVSLPSAPGLMPTSAPPTQIMPSPVVEPVGSPSECLLLKNMFDPTTETEPDFDIDIKEDVEEECSRFGRVKHIYVDKSAGFVYLRFESEEAASAAQRAMHMRWFARRLISAVFMEPQLYEAKFKVEA 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00236 571 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 383 IPR000504 GO:0003723
Accr12g00236 571 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 501 553 IPR000504 GO:0003723
Accr12g00236 571 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 272 IPR000504 GO:0003723
Accr12g00236 571 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 377 IPR000504 GO:0003723
Accr12g00236 571 SMART rrm1_1 204 276 IPR000504 GO:0003723
Accr12g00236 571 SMART rrm1_1 479 555 IPR000504 GO:0003723
Accr12g00236 571 SMART rrm1_1 306 379 IPR000504 GO:0003723
Accr12g00236 571 SUPERFAMILY RNA-binding domain, RBD 304 558 IPR035979 GO:0003676
Accr12g00236 571 FunFam Splicing factor CC1-like 125 288 - -
Accr12g00236 571 CDD RRM3_RBM39_like 477 558 - -
Accr12g00236 571 Gene3D - 474 571 IPR012677 -
Accr12g00236 571 SUPERFAMILY RNA-binding domain, RBD 196 283 IPR035979 GO:0003676
Accr12g00236 571 Coils Coil 135 157 - -
Accr12g00236 571 MobiDBLite consensus disorder prediction 1 174 - -
Accr12g00236 571 NCBIfam splicing factor, CC1-like family 90 567 IPR006509 GO:0003723|GO:0005634|GO:0006397
Accr12g00236 571 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 398 496 IPR029123 -
Accr12g00236 571 CDD RRM1_RBM39_like 204 276 - -
Accr12g00236 571 FunFam Splicing factor CC1-like 289 394 - -
Accr12g00236 571 Gene3D - 196 290 IPR012677 -
Accr12g00236 571 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 567 IPR006509 GO:0003723|GO:0005634|GO:0006397
Accr12g00236 571 MobiDBLite consensus disorder prediction 12 174 - -
Accr12g00236 571 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 280 IPR000504 GO:0003723
Accr12g00236 571 Gene3D - 299 395 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00236 Accr-Chr12 2121006 2126534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00236 285 378 Eukaryotic Initiation Factors Gene Family AT4G34110 35.789 2.64e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00236 K13091 - gmx:100793461 674.855