Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00231 ATGTCTATAGGACGTGGAACATATAGCAACGTGTACAAAGCCAGAGAAAAGGCAACGGGGAAGATTTTTGCCATGAAGAAGGTTCGGTTTGACACATCAGATTCTGAAAGTATAAAGTTCATGGCGAGGGAAATCATGATTCTGCAGAAGCTAGACCATCCCAATGTCATCAAGCTTGAAGGCATAGCCACCTCAAGAATGCAGTATAGTCTCTACCTAGTCTTTGATTACATGCAGTGCGACCTTACCCGAGTGATCACCCGCCCCGGCGAGAAACTCACTGAACCACAGATTAAGTGTTATATGCAGCAATTGCTTTCTGGACTACAGCATTGCCATGAGAGGGGAGTGATGCACCGAGACATAAAAGCTTCAAACTTGTTAATAGACAAGAAAGGAGTGCTAAAAGTTGCAGATTTTGGGCTGGCAAATTCTTTTGATCTTAAACCAAAAGGTCCTTTCACCAATCGAGTAGTGACACTCTGGTATAGAGCTCCTGAATTACTTTTGGGTTCAACTTATTATGGTTTCGACATTGATCTCTGGAGTGCTGGATGCCTCTTGGCTGAGATGTTCTTAGGAAAGCCCATCATGCCTGGCAGGACTGAGGTTGAACAATTGCACATGATCTTCAAGCTGTGTGGTTCTCCAACAGAGGATTACTGGAAGAAATTGAAGCTAATGACAAGTTATAGGCCACCAAATTACAAGCCTAATTATGACGAAGCTTTCAAGGATTTTCCTCCCTCTTGTATTGGACTCTTAATTACGCTTCTCGATCTTGATCCTAACTATCGTGGCACTGCTGCCTCTGCCCTCCAATCTGAATTCTTCAAGACTAGTCCTTTCCCGTGCTCTCTTTCAGCTCTACCGGTAATATCCAAAGACGAGGATGAGCGCTCACATACCAAAAGACGCAAAAAGCATAGGTCAAACAAGAAAGGACAAATACCTCAGCCAAGTAACTTAACTCAGTCAAGAAAAAATAACGTTGCCGATGGACAAGTCGTGGGAAATCCAGAATTGTCAAAAGAGGAGAAGAATGTGGAAGGAAGCATGTCTGGTTTAGAAACGGGGTATAGTGTAAGCAGCACATCGTCGAACTCAAAACAATATACAACAGAAGGAAGCTTGAATACGTCACTGACTCTGTCTCCAGTTTTTTTGTCAAGTGGTGAGAAAAGAGCTCCCAGGACTGAAGCACACCCTAATGCTCTCAAGAACGTCAAGAACTATAGCATCAGCTACTTGCAGGCCATGCTGAATGGCAAAGAAGGCAATGAATACTCATCTCAATTTCGCCGATCCTTTTCTTTTGCGGAACGGTTTGATCCTGATAAGTTATCTAATCTCATTGAATTAAATAAGAGGTTGGGCAATCGAAATTGA 1389 0.4298 MSIGRGTYSNVYKAREKATGKIFAMKKVRFDTSDSESIKFMAREIMILQKLDHPNVIKLEGIATSRMQYSLYLVFDYMQCDLTRVITRPGEKLTEPQIKCYMQQLLSGLQHCHERGVMHRDIKASNLLIDKKGVLKVADFGLANSFDLKPKGPFTNRVVTLWYRAPELLLGSTYYGFDIDLWSAGCLLAEMFLGKPIMPGRTEVEQLHMIFKLCGSPTEDYWKKLKLMTSYRPPNYKPNYDEAFKDFPPSCIGLLITLLDLDPNYRGTAASALQSEFFKTSPFPCSLSALPVISKDEDERSHTKRRKKHRSNKKGQIPQPSNLTQSRKNNVADGQVVGNPELSKEEKNVEGSMSGLETGYSVSSTSSNSKQYTTEGSLNTSLTLSPVFLSSGEKRAPRTEAHPNALKNVKNYSISYLQAMLNGKEGNEYSSQFRRSFSFAERFDPDKLSNLIELNKRLGNRN 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00231 462 FunFam Putative serine/threonine-protein kinase 80 316 - -
Accr12g00231 462 MobiDBLite consensus disorder prediction 294 377 - -
Accr12g00231 462 ProSiteProfiles Protein kinase domain profile. 1 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00231 462 Pfam Protein kinase domain 2 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00231 462 MobiDBLite consensus disorder prediction 315 333 - -
Accr12g00231 462 SUPERFAMILY Protein kinase-like (PK-like) 3 284 IPR011009 -
Accr12g00231 462 PANTHER CELL DIVISION PROTEIN KINASE 2 284 - -
Accr12g00231 462 CDD STKc_CDK9_like 3 278 - -
Accr12g00231 462 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Accr12g00231 462 ProSitePatterns Protein kinases ATP-binding region signature. 3 26 IPR017441 GO:0005524
Accr12g00231 462 Gene3D Transferase(Phosphotransferase) domain 1 80 318 - -
Accr12g00231 462 MobiDBLite consensus disorder prediction 354 377 - -
Accr12g00231 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Accr12g00231 462 SMART serkin_6 3 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00231 462 FunFam probable serine/threonine-protein kinase At1g54610 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00231 Accr-Chr12 2074862 2078518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00231 3 314 Core Cell Cycle Gene Families AT5G10270 46.847 2.77e-94 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Accr12g00231 Pkinase 8.9e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00231 K08819 - gmx:100782603 576.244