Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00210 ATGTCGGGGAAGAGAAATAACCAAACCAGTCCTGCTGGAAGCCCAACTTCTGGGAACATCTCAGACAGCTCTTCCAAAGATCAAGACAGGTTCCTCCCCATTGCCAACGTTAGCCGTATCATGAAAAGGGCACTTCCCGCTAATGCCAAAATCTCCAAGGAAGCCAAAGAGACAGTTCAAGAATGTGTCTCTGAGTTCATAAGCTTCATCACCGGTGAAGCATCCGACAAGTGCCAGAGAGAAAAGAGGAAGACAATCAACGGCGACGATCTTCTGTGGGCCATGACAACGTTGGGGTTCGAGAATTATGTTGGACCCTTGAAGGTGTACCTCGGTAACTACAGGGAAACAGAGGGAGACAAGAGTTGTGTTGGTACCAAACAAGAAGATCAAGCTCAGGCAGAAACTAACGATGGGGTCGCTGATATCAACAGGTTGACGAATTCTGTCTCAGCAAAAGCAGATCTTGCTGGTTTCAACGGTGCGTTTTACTCTGTTACATCTCCTGTTGCTCCAAAGAGCTTCGCAGAGATAGCAGGGTTCACTGGTTTCAGAGAGAACCCCATGAACATGGCTATTGCTCAGAGTGCAGTTCATAATGAAGCTGATGGAAACCTGAGTTACAGGGTTGAGTGGTAG 639 0.4757 MSGKRNNQTSPAGSPTSGNISDSSSKDQDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLGNYRETEGDKSCVGTKQEDQAQAETNDGVADINRLTNSVSAKADLAGFNGAFYSVTSPVAPKSFAEIAGFTGFRENPMNMAIAQSAVHNEADGNLSYRVEW 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00210 212 Gene3D Histone, subunit A 18 153 IPR009072 GO:0046982
Accr12g00210 212 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Accr12g00210 212 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Accr12g00210 212 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Accr12g00210 212 MobiDBLite consensus disorder prediction 1 28 - -
Accr12g00210 212 FunFam Nuclear transcription factor Y subunit B-3 20 143 - -
Accr12g00210 212 SUPERFAMILY Histone-fold 28 137 IPR009072 GO:0046982
Accr12g00210 212 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Accr12g00210 212 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 12 137 IPR027113 GO:0001228|GO:0006355|GO:0016602
Accr12g00210 212 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00210 Accr-Chr12 1948028 1948666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00210 12 131 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.667 1.74e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Accr12g00210 CBFD_NFYB_HMF 1.1e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00210 K08065 - qsa:O6P43_023270 286.96