Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00207 ATGAATTCCGTGCCCAACTTCTTTGTTGCGGTTTTCTCCCTTTGTTTTCTTTCTCTGCCCTTCTCGGGTTTTGCCTCAGAAGTTGAACTCCGATCTTTGCTCGAATTCAAGAAAGGGATTAATAAGGATCCGATTGGAAGAGTTTTCGACTCATGGAAGCTGTCTTCACTCAGCGACCTCAACGACTGTCCTCATTCTTGGGCTGGAGTTGCCTGCGAAGATGGAACCGGCAACGTCACCGCCGTGGTCCTCGATAGGCTCAGTTTGGGGGGTGAGCTGAAATTTCACACTCTACTTGAACTCAAGATGCTAAAGAATCTCAGCCTCTCCGGAAATGACTTTACTGGGCGGCTGCCTCCGGCATTGGGGACATTGACCACTTTGCAGCATTTGGATCTTTCCGACAACAAGTTCTACGGGCCGATCCCAGCTCGAATTAATGATCTTTGGGGATTGAATTATCTCAATTTGTCTAAGAATAACTTCAAGGGTGGGTTTCCGATAGGGTTATATAATCTTCAGCAGCTGAGAGGGCTGGATTTGCGTTCGAATGAGCTTTGGGGTGATATTGGTGATGTATTGTCCGCATTGCGGAATGTGGAGCATCTTGATTTGAGCTCTAATAAGTTCTACGGGGGGCTCTCGCTTGGAAAGGAGAATGTTTCTGGCTTGGCGAATACGGTCCATTTTCTAAATCTGAGTTACAACGAATTAAATGGCCCGTTCTTTGGGGGTGATTCAATTGCATTGTTTCGTAATCTGCAAGTTCTGGATTTGGGTCACAATCAGATCAGCGGGGAGCTTCCCTCTTTTGGTTCATTGCCAAGTCTTCGAGTTTTGCGACTTGACAGTAATCTATTATATGGGTCAATACCGGAGGAGCTGTTAGAAACTTCTATGTCACTAGAAGAATTGGATCTTAGCGCTAACGGGTTTACAGGTTCAATTCCTTCAATCAACTCGACATCTTTGAATATTTTGAATCTTTCATCAAATGGTTTATCAGGCTCTTTGCCAACACCTTTGAGAAAATGCACTGTGATGGACTTAAGCAGGAATATGTTAGATGGTGATGTATCTGTTATGCGGAATTGGGAAGCCACATTTGAGGTTCTTGATCTGAGTTCAAACAGGCTGTCAGGAAGCTTTCCCAATTTGACAAATCAGTTTGAGGGATTAACCACACTCTCTCTCAGGAATAATTCCTTAGGTGGAACTTTGCCTCCTAATTTGGGGACCTATTCTAAATTGTCCATCGTTGATTTCAGTTTGAATGAACTTAATGGCCCTATTCCTGTTAGTTTATTTAGTTCAACAACATTGACAAGCCTGAATCTTTCTGGAAATCATTTTACTGGGTCAATTTCTCTTGAAAACTCGGGAGCCAGTGAATTAATAATTATGACACCTTATGAGCCAATGGAATATCTTGATTTATCTGATAACTCCTTAAAAGGTATCTTACCTTCTGACATAAGTAGGTTGGGTGGGCTCAAACTGTTGAATCTTGCCAGGAATGATTTTTCAGGACAGCTGCCCAGTGAATTGAGCAAACTTGTTAATTTGGAGTACCTTGATTTGTCTAACAATAGATTCAAGGGACAAATTCCTGATAAGCTTTCATCCAACTTGAATGTGTTTAATGTGTCCAATAATGATTTATCTGGTGATGTTCCAGGTAATTTGAGGAGGTTTCCTCCTTCATCATTTCACCCTGGAAATCAAAAGCTGAACTCACCAGATCATAGTGGTGGTTCTTCAGTGCCTGATAATATTTATGGCCATGAGAAGCGTCATAGTTCAAAGGAAAATATCAAGATAGCCATTATTCTTGCTTCAGTTGGTGCTGCTGTGATGATTGTTTTTGTTTTCTTGGCTTATCACAGAACACAACTTAAAGAATTTCGTGGCCGAAGTGGCTTCGCTGGTCAAAATACTGGAAGGGATATCAAATCAGGAGGGCTTGTACGGCCTTCCCTCTTCAAGTTTCACCCAAATGCTCAGCCACCAGCAAGTTCATTGAGCTTTTCAAATGATCACTTGCTGACATCCAATTCAAGATCACTCTCTGGACAGTCGGAGTTTGTAACTGAAATTACCGAGCATGGCTTAGCACAGGGAAAGGGAGCAGCTAGTTCAGCTTCTGTAAATCCAGATTTGATGGATAACCCTCCCACATCATCTGGAAGGAGGTCATCTCCTGGTTCCCCATTATCTTCCTCCCCCCGTTTTATAGAAGCACAAGAAAAACCAGTAATGTTGGATGTGTATTCACCAGATCGCCTGGCTGGAGAGTTGCACTTCCTTGATTCTTCCGTAGCTTTTACTGCGGAGGAATTATCTCGAGCTCCAGCTGAAGTTCTTGGCAGAAGTAGTCATGGTACTTTATACAAAGCTACACTAGACAGTGGTCATATGTTGACTGTAAAGTGGTTACGTGTTGGATTGGTGAAACATAAGAAGGAATTTGCTAGAGAAGTTAAAAGGATTGGTTCTATGAGGCATCCTAACATTGTCCCATTGCGGGCATACTATTGGGGGCCCAGGGAACAAGAGAGGCTTCTTTTAGCTGACTATATACCTGGCGACAGCTTGGCCTTACATCTTTATGAGACAACACCCAGGAGGTACTCACCATTGTCATTCGGCCAGAGGCTAAGAGTTGCAGCTGAAGTTGCTCGATGCCTTTTATATCTACATGATCGAGGGCTTCCCCATGGGAATCTAAAACCAACAAATATATTATTAGCAGGCCCTGAATACAGTGCCCGTCTAACTGACTATGGTCTGCACCGCCTAATGACGCCTGCCGGAATTTCAGAGCAGATACTAAATCTCGGAGCACTTGGATACCGTGCTCCAGAACTTGCCTCTGCCAATAAACCAGTCCCATCATTTAAGGCAGATGTGTATGCACTTGGTGTGATCTTAATGGAATTATTAACGAGAAAAAGTGCAGGCGACATAATATCAGGTCAATCTGGGGCTGTTGATCTAACAGATTGGGTGAGGCTTTGTGAGCAAGAAGGACGTGTAATGGACTGTATTGACAGAGACATTGCAGGCGATGAAGAATCTTCAAGAGAGATGGATGAATTACTTGCAATATCGCTCAGGTGTATTCTCCCTGTAAATGAGAGGCCTAATATCAGACAAGTCTTGGACGATCTTTGTTCCATATCGGCTTGA 3189 0.4321 MNSVPNFFVAVFSLCFLSLPFSGFASEVELRSLLEFKKGINKDPIGRVFDSWKLSSLSDLNDCPHSWAGVACEDGTGNVTAVVLDRLSLGGELKFHTLLELKMLKNLSLSGNDFTGRLPPALGTLTTLQHLDLSDNKFYGPIPARINDLWGLNYLNLSKNNFKGGFPIGLYNLQQLRGLDLRSNELWGDIGDVLSALRNVEHLDLSSNKFYGGLSLGKENVSGLANTVHFLNLSYNELNGPFFGGDSIALFRNLQVLDLGHNQISGELPSFGSLPSLRVLRLDSNLLYGSIPEELLETSMSLEELDLSANGFTGSIPSINSTSLNILNLSSNGLSGSLPTPLRKCTVMDLSRNMLDGDVSVMRNWEATFEVLDLSSNRLSGSFPNLTNQFEGLTTLSLRNNSLGGTLPPNLGTYSKLSIVDFSLNELNGPIPVSLFSSTTLTSLNLSGNHFTGSISLENSGASELIIMTPYEPMEYLDLSDNSLKGILPSDISRLGGLKLLNLARNDFSGQLPSELSKLVNLEYLDLSNNRFKGQIPDKLSSNLNVFNVSNNDLSGDVPGNLRRFPPSSFHPGNQKLNSPDHSGGSSVPDNIYGHEKRHSSKENIKIAIILASVGAAVMIVFVFLAYHRTQLKEFRGRSGFAGQNTGRDIKSGGLVRPSLFKFHPNAQPPASSLSFSNDHLLTSNSRSLSGQSEFVTEITEHGLAQGKGAASSASVNPDLMDNPPTSSGRRSSPGSPLSSSPRFIEAQEKPVMLDVYSPDRLAGELHFLDSSVAFTAEELSRAPAEVLGRSSHGTLYKATLDSGHMLTVKWLRVGLVKHKKEFAREVKRIGSMRHPNIVPLRAYYWGPREQERLLLADYIPGDSLALHLYETTPRRYSPLSFGQRLRVAAEVARCLLYLHDRGLPHGNLKPTNILLAGPEYSARLTDYGLHRLMTPAGISEQILNLGALGYRAPELASANKPVPSFKADVYALGVILMELLTRKSAGDIISGQSGAVDLTDWVRLCEQEGRVMDCIDRDIAGDEESSREMDELLAISLRCILPVNERPNIRQVLDDLCSISA 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00207 1062 SMART LRR_sd22_2 519 546 - -
Accr12g00207 1062 SMART LRR_sd22_2 197 226 - -
Accr12g00207 1062 SMART LRR_sd22_2 125 151 - -
Accr12g00207 1062 SMART LRR_sd22_2 251 276 - -
Accr12g00207 1062 FunFam Pollen receptor-like kinase 1 860 1062 - -
Accr12g00207 1062 Pfam Leucine Rich repeat 437 453 IPR001611 GO:0005515
Accr12g00207 1062 FunFam Nuclear pore complex protein NUP107 26 192 - -
Accr12g00207 1062 ProSiteProfiles Leucine-rich repeat profile. 253 275 IPR001611 GO:0005515
Accr12g00207 1062 PANTHER OS07G0626500 PROTEIN 9 104 - -
Accr12g00207 1062 MobiDBLite consensus disorder prediction 706 744 - -
Accr12g00207 1062 Gene3D Ribonuclease Inhibitor 220 584 IPR032675 -
Accr12g00207 1062 Pfam Leucine rich repeat N-terminal domain 29 72 IPR013210 -
Accr12g00207 1062 Gene3D Transferase(Phosphotransferase) domain 1 861 1062 - -
Accr12g00207 1062 MobiDBLite consensus disorder prediction 571 586 - -
Accr12g00207 1062 MobiDBLite consensus disorder prediction 558 597 - -
Accr12g00207 1062 ProSiteProfiles Protein kinase domain profile. 782 1062 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00207 1062 SUPERFAMILY Protein kinase-like (PK-like) 785 1057 IPR011009 -
Accr12g00207 1062 SMART LRR_typ_2 274 298 IPR003591 -
Accr12g00207 1062 SMART LRR_typ_2 519 543 IPR003591 -
Accr12g00207 1062 SMART LRR_typ_2 173 197 IPR003591 -
Accr12g00207 1062 SMART LRR_typ_2 251 273 IPR003591 -
Accr12g00207 1062 SMART LRR_typ_2 390 414 IPR003591 -
Accr12g00207 1062 SMART LRR_typ_2 101 125 IPR003591 -
Accr12g00207 1062 SUPERFAMILY RNI-like 106 554 - -
Accr12g00207 1062 Gene3D Ribonuclease Inhibitor 26 215 IPR032675 -
Accr12g00207 1062 PRINTS Leucine-rich repeat signature 519 532 - -
Accr12g00207 1062 PRINTS Leucine-rich repeat signature 474 487 - -
Accr12g00207 1062 Pfam Leucine Rich repeats (2 copies) 253 291 IPR025875 -
Accr12g00207 1062 MobiDBLite consensus disorder prediction 710 743 - -
Accr12g00207 1062 FunFam Leucine-rich repeat receptor protein kinase EMS1 467 562 - -
Accr12g00207 1062 FunFam Leucine-rich repeat receptor-like protein kinase 767 859 - -
Accr12g00207 1062 Gene3D Phosphorylase Kinase; domain 1 763 859 - -
Accr12g00207 1062 ProSiteProfiles Leucine-rich repeat profile. 521 543 IPR001611 GO:0005515
Accr12g00207 1062 Pfam Protein kinase domain 786 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00207 1062 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 244 465 - -
Accr12g00207 1062 Pfam Leucine rich repeat 475 532 IPR001611 GO:0005515
Accr12g00207 1062 Pfam Leucine rich repeat 152 210 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00207 Accr-Chr12 1914031 1918884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00207 33 1057 Receptor kinase-like Gene Family AT5G01890 29.050 7.49e-85 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Accr12g00207 Pkinase 2.6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00207 - - pcin:129320307 1835.08