Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00201 ATGAATTCAACATCCACACAGTTTGTTTCCTCAAGAAGGATGGGTTTATATGATCCTATCCACCAGATTAGCATGTGGGAAGAAAACTTCAAAAGTAATTGTAATTCAAGTGCTTCTGTGCCCTTAATTGGTGAGGCAGATGTCAAGTTAGATAATCAGTCAGAGGATTCTTCTCAAGGAATGCTCGGAATTCCAAAGAATTATGACCAAGAAGCTAATAAGTCTATTGAAAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGTCGTCTGCGGAAAAAGGCTTATGTTCAGCAATTAGAATCAAGCCGTTTGAAGTTGATCAAGTTAGAGCAAGAGCTGGACCGTGCAAGACATCAGGGATCCTTTACAGGTTGTGTACTTGATTCTGATAATTTGGTATTTGCTGGATCTGTAAATTCAGGCATAGCAACCTTTGAGATGGAGTATGGGCAGTGGGTAGAAAAACAAGACAGACAAATTTGTGAGCTGAGAAGTGCTTTAAATGCTCATATCAGTGACATAGAGCTCAGAATACTTGTAGATGGTATAATGAATCACTATTCTCACCTTTTCCGCATGAAATCAGCAGCTGCAAAAGTGGATGTTTTCTATGTCTTGTTTGGTATGTGGAAAACAACAGCTGAACGGTTTTTCTTGTGGATTGGAGGATTCCGCCCATCCGAGCTTCTCAAGGTTCTTGTCCCTTTGATCGAACCTTTGACAGAACAACAACGAATGGATGTTTATAACCTTGGACAATCATGCCAGCAAGCAGAAGATGCCCTTTCACAAGGCCGGGACAGACTTCAGCAAATACTTGTTGAAACCGTTGTCGCCGGACAACTGGTGGACGGAACTTACATTCCTCAGATGACTATTGCAGTGGAGAAGTTGGAAGCTTTGGTGAGCTTTGTGAATCAGGCTGATCATCTTCGGCAAGAAACACTGCAACAAATGTTTAGAATCCTTACAATTCGTCAGGCAGCTCGGTGCTTGCTTGCCTTAGGGGAATACTTCCAACGTTTGAGGGCTTTGAGCTCCCTTTGGGCTAATCGTCCTTCTGAACCACCCGCTTAA 1092 0.4258 MNSTSTQFVSSRRMGLYDPIHQISMWEENFKSNCNSSASVPLIGEADVKLDNQSEDSSQGMLGIPKNYDQEANKSIEKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLIKLEQELDRARHQGSFTGCVLDSDNLVFAGSVNSGIATFEMEYGQWVEKQDRQICELRSALNAHISDIELRILVDGIMNHYSHLFRMKSAAAKVDVFYVLFGMWKTTAERFFLWIGGFRPSELLKVLVPLIEPLTEQQRMDVYNLGQSCQQAEDALSQGRDRLQQILVETVVAGQLVDGTYIPQMTIAVEKLEALVSFVNQADHLRQETLQQMFRILTIRQAARCLLALGEYFQRLRALSSLWANRPSEPPA 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00201 363 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Accr12g00201 363 SUPERFAMILY Leucine zipper domain 78 113 IPR046347 GO:0003700|GO:0006355
Accr12g00201 363 Gene3D - 76 126 - -
Accr12g00201 363 SMART brlzneu 74 140 IPR004827 GO:0003700|GO:0006355
Accr12g00201 363 PANTHER TRANSCRIPTION FACTOR TGA9 1 360 - -
Accr12g00201 363 Pfam bZIP transcription factor 78 108 IPR004827 GO:0003700|GO:0006355
Accr12g00201 363 Pfam Seed dormancy control 164 239 IPR025422 GO:0006351|GO:0043565
Accr12g00201 363 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351|GO:0043565
Accr12g00201 363 FunFam BZIP family transcription factor 77 126 - -
Accr12g00201 363 Coils Coil 97 124 - -
Accr12g00201 363 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 118 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00201 Accr-Chr12 1877744 1879974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00201 1 361 Calmodulin-binding Proteins AT5G10030 68.044 2.25e-180 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Accr12g00201 DOG1 5.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00201 K14431 - gmx:100793353 573.163