Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00199 ATGGCGGATCACTCAGATACTTCACCGCTGGTCTCTCCACCGCCGATCACTGACCCTAACGAGATCGACCTTGAGGCCGGTCCGAGCGAACAAATTCAATGCCGAATCTGCCTCGAAACTGATGGTAGAGATTTCATAGCTCCTTGCAAATGCAAAGGCACATCAAAATATGTACATCGAGAGTGTTTGGATCATTGGCGAGCTGTTAAGGAAGGGTTTGCATTTGCTCACTGCACAACCTGCAAGGCTCCTTATCATTTGCGTGTTCATGTTGCTGTTGATAGGAAATGGCGAACCTTGAAGTTTCGATTCTTTGTTACCAGAGACATTTTATTTATTTTTCTGGCTGTCCAGCTAGTCATTACTTCACTTGCTTATTTGGTTTATCTAATAGATGGTTACCAGCAGTACTGGCTTCGTCTTATATGGGGTTTTGAGAGTGAGCTTAGCTTTTATTATTTATGTGGAGCTTTATTGTTTTTTGCTTTGCTTGGCCTATCTGGGTGCTTCATTACTTGTTATGATCGGAGGGTGCGCAATGATTTGGCTCAGCCTTGTCGAGAATTATGCCTTTGTTGTTGTCACCCTGGAGTTTGTGCAGACTGTCATTTGCCAGGCACTCTTTGTATGTGGACTGATTGCACTGCATGCTTTGAGAGTTGTGGAACTATGGCTACTGAATGTGGTGGTTGCTTGGGAGGTGCTGGGGAAGCAGGGTTGCCCTTGTTACTTATAATGGGAGTGATTGTTCTAGGACTTTTTACTGTAATAGGGATATTTTACAGTGTATTGGTGGCTACCATGGTAGGACAACGGATATGGCAGCGACATTATCACATACTCGCAAAACGGATGCTAACAAAGGAGTACGTGGTTGAGGATGTTGATGAGTTGGTAGGGTCTGATTGGTCTCCCCCATCTCTGCCATCCGAGCATGTTCAGCAGCTGAAAACACTGGGCCTCCTATGA 969 0.451 MADHSDTSPLVSPPPITDPNEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHVAVDRKWRTLKFRFFVTRDILFIFLAVQLVITSLAYLVYLIDGYQQYWLRLIWGFESELSFYYLCGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCHPGVCADCHLPGTLCMWTDCTACFESCGTMATECGGCLGGAGEAGLPLLLIMGVIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDELVGSDWSPPSLPSEHVQQLKTLGLL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00199 322 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 19 321 - -
Accr12g00199 322 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Accr12g00199 322 CDD RING_CH-C4HC3_MARCH 34 82 - -
Accr12g00199 322 MobiDBLite consensus disorder prediction 1 22 - -
Accr12g00199 322 SMART ringv_2 33 82 IPR011016 GO:0008270
Accr12g00199 322 SUPERFAMILY RING/U-box 29 86 - -
Accr12g00199 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 95 IPR013083 -
Accr12g00199 322 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00199 Accr-Chr12 1835685 1839071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00199 1 322 C3H Transcription Factor Family AT2G22120 83.333 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00199 - - gmx:100791777 603.979