Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00196 ATGCAAGCTCTCTCTGATTTCTTCTTTCATCTCTACGCAAAGACCATCGTCCTGTTGGTCTTCTTGCTCATAGAGCTCATCATCCTCGTCCGAAACCTCAAAACTCACACACCTCCAATGACTATCTCCCAGTACCTCCAACTCATCGAAGAGAAAACCCCAACCGTTTGTTTCACCAGAACACTGAACATGGCAGATCAACAAGAGTGTAGGGTTTGCTTATCTGAGCTTCAAGAAGGCGACAAAGTTAGGACCTTGAAATGTAAACACACATTTCACCAGGAATGTTTGGACCGGTGGTTGCTTCAGTTTTGGGCTACTTGTCCTCTCTGTAGAAACAGAGTCCTCCCAGAAGATGTCGTCACCGATTATCAACGGCTTCGGAATCAGAGGGAATTGATCATCTTTCCCTTCTGGGAGTCGTCGGAAGATTAG 435 0.4598 MQALSDFFFHLYAKTIVLLVFLLIELIILVRNLKTHTPPMTISQYLQLIEEKTPTVCFTRTLNMADQQECRVCLSELQEGDKVRTLKCKHTFHQECLDRWLLQFWATCPLCRNRVLPEDVVTDYQRLRNQRELIIFPFWESSED 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00196 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 119 IPR013083 -
Accr12g00196 144 PANTHER - 1 131 - -
Accr12g00196 144 Pfam Ring finger domain 69 112 IPR001841 -
Accr12g00196 144 CDD RING-H2_RNF103 64 112 - -
Accr12g00196 144 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Accr12g00196 144 SMART ring_2 70 111 IPR001841 -
Accr12g00196 144 SUPERFAMILY RING/U-box 52 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00196 Accr-Chr12 1825556 1826190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00196 68 126 C3H Transcription Factor Family AT1G15100 52.542 1.02e-18 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00196 K16282 - gmx:102669811 163.696