Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00177 ATGTATGATAGTAGCAGCAGCCTGGCATCACATTTCATAGATCCCTATGGTGAAGATCTGACGAAGGCTCTTGAACCTTTTATGAAAATGGATTCACCGACGTCGTCTCTATCTTCTATCTCTCTTCCATCATCACCTTCTTGCTCTTATACTTCACCCACTTCTATGTCCAGTTATTATCCGAACCTCCGTACAGCATCAAGCTCCCACTTATTTTCTCCTGGGTTCTCGAGTAGCATAGGGCTTAACCAACTCACCCCATCTCAAATTCTTCAGATTCAGGCTCAATTCCTGGTCCGAAAGCAACAATCCCTCGATTTCCTCGGTCCTAAACCTGTCCCCATGAAACATGTCCGTAATGCTCCGAAACCCATGAAACTATACCGAGGAGTGAGGCAGAGGCATTGGGGGAAATGGGTGGCTGAGATCAGACTGCCAAAGAATCGGACCCGTCTCTGGCTCGGCACTTTTGACACCGCCGAAGAGGCTGCTTTGGCTTATGACAACGCTGCTTATAAGCTGAGGGGTGATTTTGCTCGCCTTAATTTCCCTCACCTGCGACACCAAGGAGCTCATGTCTTTGGGGAATTTGGGAATTACAAACCTCTTCATTCCTCCGTCGATGCCAAGCTTCAAGCTATTTGTGAAAGTTTGGCCAATTCCCAGAAACAGGGGAGTACAGGGGAAACTTTATCCGTCGGCGATTCAAAGCCTGAGGCGGCGCCGGAAGAGTCAGAATCGAAGAGTGATGTGGAGGATTGTAAGGTGGAGAACACAGCATCGTCGCCTTTGTCTGATGAATCCTGGGCTGGGTCGTCTTCTCCCGAATCCGACATCACTTTCTTGAATTTTTCTGATTCCAAGGATGATGAGACCATCGACTTTGGGCTGGAGAAGTTTCCTTCCGTGGAGATTGATTGGTCTGCTATTTGA 933 0.4812 MYDSSSSLASHFIDPYGEDLTKALEPFMKMDSPTSSLSSISLPSSPSCSYTSPTSMSSYYPNLRTASSSHLFSPGFSSSIGLNQLTPSQILQIQAQFLVRKQQSLDFLGPKPVPMKHVRNAPKPMKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAYKLRGDFARLNFPHLRHQGAHVFGEFGNYKPLHSSVDAKLQAICESLANSQKQGSTGETLSVGDSKPEAAPEESESKSDVEDCKVENTASSPLSDESWAGSSSPESDITFLNFSDSKDDETIDFGLEKFPSVEIDWSAI 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00177 310 SMART rav1_2 127 190 IPR001471 GO:0003700|GO:0006355
Accr12g00177 310 SUPERFAMILY DNA-binding domain 127 185 IPR016177 GO:0003677
Accr12g00177 310 MobiDBLite consensus disorder prediction 256 282 - -
Accr12g00177 310 FunFam Ethylene-responsive transcription factor 2 126 185 - -
Accr12g00177 310 ProSiteProfiles AP2/ERF domain profile. 127 184 IPR001471 GO:0003700|GO:0006355
Accr12g00177 310 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 6 310 - -
Accr12g00177 310 Gene3D AP2/ERF domain 127 185 IPR036955 GO:0003700|GO:0006355
Accr12g00177 310 MobiDBLite consensus disorder prediction 239 255 - -
Accr12g00177 310 Pfam AP2 domain 128 176 IPR001471 GO:0003700|GO:0006355
Accr12g00177 310 MobiDBLite consensus disorder prediction 224 283 - -
Accr12g00177 310 CDD AP2 126 186 IPR001471 GO:0003700|GO:0006355
Accr12g00177 310 PRINTS Ethylene responsive element binding protein signature 128 139 IPR001471 GO:0003700|GO:0006355
Accr12g00177 310 PRINTS Ethylene responsive element binding protein signature 150 166 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00177 Accr-Chr12 1682646 1683578 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00177 14 310 AP2-EREBP Transcription Factor Family AT4G39780 51.342 5.88e-84 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr12g00177 AP2 7.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00177 K09286 - cave:132166068 347.436