Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00176 ATGATGGCAACTATAGGTATGTATGATAGTAGCAGCAGCCTGGCATCACATTTCATAGATCCCTATGGTGAAGATCTGACGAAGGCTCTTGAACCTTTTATGAAAATGGATTCACCGACGTCGTCTCTATCTTCTATCTCTCTTCCATCATCACCTTCTTGCTCTTATACTTCACCCACTTCTATGTCCAGTTATTATCCGAACCTCCGTACAGCATCAAGCTCCCACTTATTTTCTCCTGGGTTCTCGAGTAGCATAGGGCTTAACCAACTCACCCCATCTCAAATTCTTCAGATTCAGGCTCAATTCCTGGTCCGAAAGCAACAATCCCTCGATTTCCTCGGTCCTAAACCTGTCCCCATGAAACATGTCCGTAATGCTCCGAAACCCATGAAACTATACCGAGGAGTGAGGCAGAGGCATTGGGGGAAATGGGTGGCTGAGATCAGACTGCCAAAGAATCGGACCCGTCTCTGGCTCGGCACTTTTGACACCGCCGAAGAGGCTGCTTTGGCTTATGACAACGCTGCTTATAAGCTGAGGGGTGATTTTGCTCGCCTTAATTTCCCTCACCTGCGACACCAAGGAGCTCATGTCTTTGGGGAATTTGGGAATTACAAACCTCTTCATTCCTCCGTCGATGCCAAGCTTCAAGCTATTTGTGAAAGTTTGGCCAATTCCCAGAAACAGGGGAGTACAGGGGAAACTTTATCCGTCGGCGATTCAAAGCCTGAGGCGGCGCCGGAAGAGTCAGAATCGAAGAGTGATGTGGAGGATTGTAAGGTGGAGAACACAGCATCGTCGCCTTTGTCTGATGAATCCTGGGCTGGGTCGTCTTCTCCCGAATCCGACATCACTTTCTTGAATTTTTCTGATTCCAAGGATGATGAGACCATCGACTTTGGGCTGGAGAAGTTTCCTTCCGTGGAGATTGATTGGTCTGCTATTTGA 951 0.4795 MMATIGMYDSSSSLASHFIDPYGEDLTKALEPFMKMDSPTSSLSSISLPSSPSCSYTSPTSMSSYYPNLRTASSSHLFSPGFSSSIGLNQLTPSQILQIQAQFLVRKQQSLDFLGPKPVPMKHVRNAPKPMKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAYKLRGDFARLNFPHLRHQGAHVFGEFGNYKPLHSSVDAKLQAICESLANSQKQGSTGETLSVGDSKPEAAPEESESKSDVEDCKVENTASSPLSDESWAGSSSPESDITFLNFSDSKDDETIDFGLEKFPSVEIDWSAI 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00176 316 Gene3D AP2/ERF domain 133 191 IPR036955 GO:0003700|GO:0006355
Accr12g00176 316 SMART rav1_2 133 196 IPR001471 GO:0003700|GO:0006355
Accr12g00176 316 MobiDBLite consensus disorder prediction 262 288 - -
Accr12g00176 316 Pfam AP2 domain 134 182 IPR001471 GO:0003700|GO:0006355
Accr12g00176 316 FunFam Ethylene-responsive transcription factor 2 132 191 - -
Accr12g00176 316 PRINTS Ethylene responsive element binding protein signature 156 172 IPR001471 GO:0003700|GO:0006355
Accr12g00176 316 PRINTS Ethylene responsive element binding protein signature 134 145 IPR001471 GO:0003700|GO:0006355
Accr12g00176 316 ProSiteProfiles AP2/ERF domain profile. 133 190 IPR001471 GO:0003700|GO:0006355
Accr12g00176 316 MobiDBLite consensus disorder prediction 245 261 - -
Accr12g00176 316 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 2 316 - -
Accr12g00176 316 SUPERFAMILY DNA-binding domain 133 191 IPR016177 GO:0003677
Accr12g00176 316 MobiDBLite consensus disorder prediction 230 289 - -
Accr12g00176 316 CDD AP2 132 192 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00176 Accr-Chr12 1682646 1683596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00176 2 316 AP2-EREBP Transcription Factor Family AT4G39780 50.000 1.20e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr12g00176 AP2 7.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00176 K09286 - cave:132166068 349.747