Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00175 ATGACGAAGCAGAATCTGATGGTTTCCGATGCAAATCCTGCTCTCAACATGGCTATTTCTGCCTCCGTTTCCAACTCCTCCATTTTCACCGCCACCGCCCACAAACCGCTCCCCATGCCCTCCGCCTATATTCCCATTACCCGGCGAAAGGTGCTCAAGAACCTTGAAATCAATGCTTGTGTTGACTCCATGAGAGCCTCTTCTCCCACCCACCCCAAATCCACTCCTTCTCGCGCCGAAGAACATAGCTCGTGGATTCTTCACCACCCTTCTGCATTAGACATGTTTGAGCAAATCATCGATGCCTCCAAAGGCAAGCAGATTGTTATGTTTCTGGACTACGACGGCACGCTCTCGCCTATCGTCAACGACCCTGACCGTGCTTTCATGTCCGATCAAATGAGAAAAACAGTAAGAAAACTGGCGATGTCTTTTCCCACTGCCATAGTAACCGGCAGATGCAGAGACAAGGTATACAGCTTTGTTCGCTTGGCAGAGCTATATTATGCGGGAAGCCATGGCATGGATATCACAGGCCCAACAACAAGCTCCAAATACAATAAAGGAAGCAAAGCAGAGGCGATTCTTTTTCAGCCTGCCAATGAGTTTCTTCCCATGATAGATGAGGTGTACCGAGTGTTGGTTGAGAAAACCAAATCAACACCAGGAGCGATGGTGGAGAACAACAAGTTCTGCGTCTCTGTTCATTATCGTTGTGTTGATGAGAAGAAATGGAGTGAACTGGCTCACCAAGTGAAATCGGTGCTTAAGGAGTACCCGAAGCTTCGTCTCACCCAAGGAAGGAAGGTGTTTGAGATTCGTCCCACTATTAAATGGGACAAAGGGAAAGCCCTAGAATTTCTGCTAGAGTCACTTGGATTTGCCAATTGCGCTGATGTCTTCCCTGTCTACATTGGTGATGATCGAACCGACGAAGATGCCTTTAAGAAATTGAGAGACCGAGGACAAGGGTTGGGCATTCTTGTGTCAAAGTTTCCAAGGGACACATGTGCATCTTACTCTTTGCAGGAACCGGAGGAGGTGAAGGACTTTCTTCAGCGTTTGGTGGAGTGGAAACAAGCATCTCAGCGTACATGTTCCAAATAA 1107 0.4779 MTKQNLMVSDANPALNMAISASVSNSSIFTATAHKPLPMPSAYIPITRRKVLKNLEINACVDSMRASSPTHPKSTPSRAEEHSSWILHHPSALDMFEQIIDASKGKQIVMFLDYDGTLSPIVNDPDRAFMSDQMRKTVRKLAMSFPTAIVTGRCRDKVYSFVRLAELYYAGSHGMDITGPTTSSKYNKGSKAEAILFQPANEFLPMIDEVYRVLVEKTKSTPGAMVENNKFCVSVHYRCVDEKKWSELAHQVKSVLKEYPKLRLTQGRKVFEIRPTIKWDKGKALEFLLESLGFANCADVFPVYIGDDRTDEDAFKKLRDRGQGLGILVSKFPRDTCASYSLQEPEEVKDFLQRLVEWKQASQRTCSK 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00175 368 FunFam Trehalose 6-phosphate phosphatase 206 365 - -
Accr12g00175 368 SUPERFAMILY HAD-like 109 358 IPR036412 -
Accr12g00175 368 Gene3D - 209 368 IPR023214 -
Accr12g00175 368 Gene3D - 108 207 IPR023214 -
Accr12g00175 368 NCBIfam HAD-IIB family hydrolase 110 321 IPR006379 -
Accr12g00175 368 MobiDBLite consensus disorder prediction 63 82 - -
Accr12g00175 368 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 34 365 IPR044651 GO:0004805|GO:0005992
Accr12g00175 368 FunFam Trehalose 6-phosphate phosphatase 108 195 - -
Accr12g00175 368 Pfam Trehalose-phosphatase 111 345 IPR003337 GO:0003824|GO:0005992
Accr12g00175 368 CDD HAD_TPP 109 348 - -
Accr12g00175 368 NCBIfam trehalose-phosphatase 106 356 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00175 Accr-Chr12 1646507 1648647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00175 96 318 Trehalose Biosynthesis Gene Families AT1G60140 27.731 2.91e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00175 K01087 - qsa:O6P43_023219 582.022