Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00160 ATGCCAGTGGAAATGGACTTCCTAATTGTGCTTTTCCTATTGGCTTGCTTATGCTCTTTTGTATCTTCTGATTTTCAAGGAGATGCGTTATTCGCACTGAAGTTATCATTGAATGCTTTGCCTAATCAGCTTACTGATTGGAATCAAAATCAAGTAAACCCTTGTACTTGGTCTCGTGTTTACTGTGACCAAAATTCCAAAGTTGTTCAAGTTTCGTTAGCATTGATGGGATTTACTGGGGTCTTGACCCCTAGAATTGGAGCTCTAAAAAGTCTTGGAACTCTTTCATTGCAAGGGAATGGCATCACTGGTGAAATACCAAAAGAATTGGGAAATCTGACTAGCTTAATCAGACTCGATCTGGAAAACAACAAATTAACGGGAGAAATACCGTCTACCCTTGATAATCTTAAAAGGCTTCAGTTCTTGACTTTGAGTCAGAACAATCTCAGTGGAAATATTCCTGAATCACTTGGCAGCCTTCCTAGCTTGATCAATGTTCTGCTGGACTCAAATAATCTCAGTGGTCGAATTCCTGAGCAGTTATTCAACGTTCCTAAATACAATTTCAGTGGAAATCACTTAAATTGTGACATGAATTACCGCCACCCTTGTGCCTCTGATAATGCAGATCAAGGTTCATCCCATAAGCCGAAAATTGGCCTTATAGTTGGAATTATTGTTGGGTTAATCGTTGTAATTTTTCTCTTTGGTCTGCTGTTCTTCTGGTGTAAGAGTAGACGCAAGGGCTACAGACGAGAAGTTTTTGTAGATGTTGCAGGTGAAGTTGATCGCCGAATTGCATTTGGTCAACTAAAAAGATTTGCTTGGAGAGAACTACAGATAGCTACTGACAACTTCAGTGAGAAAAATGTTCTGGGACAGGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTCGCTGATAACACTAAAGTTGCTGTCAAACGGTTAACTGATTATGAAAGTCCTGGGGGGGATGCTGCTTTCCAGCGGGAAGTCGAGATGATAAGTGTAGCTGTGCATCGGAATCTGTTACGGCTGATTGGATTTTGTACTACTCCAACTGAACGTCTTCTAGTTTATCCCTTCATGCAGAACTTGAGTGTTGCCTATCGACTAAGAGAGCTGAAACCTGGAGAGCCTGTTTTAGACTGGCCAACAAGAAAGCGAGTAGCTTTAGGCACAGCCCGTGGCCTAGAATATCTTCATGAGCATTGCAATCCTAAGATTATCCATCGGGATGTGAAAGCTGCAAATGTATTACTAGATGAAGATTTTGAGGCAGTTGTAGGTGACTTTGGTTTGGCAAAGTTAGTTGATGTTCGAAAAACTAACGTGACAACTCAAGTTCGTGGAACAATGGGCCACATAGCTCCTGAATACTTGTCCACCGGGAAATCTTCTGAAAGGACAGATGTTTTTGGTTATGGCATTATGCTTTTGGAGCTTGTTACTGGTCAGCGGGCAATTGACTTTTCACGTTTGGAAGAGGAGGATGATGTGCTATTACTTGATCATGTTAAGAAACTAGAAAGGGAAAAACGTCTTGATGCCATTGTCGACTGCAACCTAAATAAAAACTACAACATACAAGAAGTTGAAATGATGATAAAAGTTGCATTACTCTGTACCCAAGCTTCACCGGAGGACCGCCCAGCAATGTCAGAGGTTGTTAGAATGCTAGAAGGAGAAGGTCTGGCTGAAAGGTGGGAGGAATGGCAACATGTGGAGGTTACTCGGAGGCAAGAATATGAGAGACTGCAAAGAAGATTTGATTGGGGAGAAGATTCAGTTCATAACCAAGATGCCATTGAGTTGTCTGGGGGGAGATGA 1833 0.4168 MPVEMDFLIVLFLLACLCSFVSSDFQGDALFALKLSLNALPNQLTDWNQNQVNPCTWSRVYCDQNSKVVQVSLALMGFTGVLTPRIGALKSLGTLSLQGNGITGEIPKELGNLTSLIRLDLENNKLTGEIPSTLDNLKRLQFLTLSQNNLSGNIPESLGSLPSLINVLLDSNNLSGRIPEQLFNVPKYNFSGNHLNCDMNYRHPCASDNADQGSSHKPKIGLIVGIIVGLIVVIFLFGLLFFWCKSRRKGYRREVFVDVAGEVDRRIAFGQLKRFAWRELQIATDNFSEKNVLGQGGFGKVYKGVLADNTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGEPVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDCNLNKNYNIQEVEMMIKVALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQHVEVTRRQEYERLQRRFDWGEDSVHNQDAIELSGGR 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00160 610 FunFam Somatic embryogenesis receptor-like kinase 1 364 581 - -
Accr12g00160 610 Gene3D Ribonuclease Inhibitor 24 206 IPR032675 -
Accr12g00160 610 Pfam Protein kinase domain 288 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00160 610 SUPERFAMILY Protein kinase-like (PK-like) 267 562 IPR011009 -
Accr12g00160 610 Gene3D Transferase(Phosphotransferase) domain 1 364 581 - -
Accr12g00160 610 SMART serkin_6 287 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00160 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Accr12g00160 610 Pfam Leucine rich repeat 91 150 IPR001611 GO:0005515
Accr12g00160 610 ProSiteProfiles Protein kinase domain profile. 287 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00160 610 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Accr12g00160 610 FunFam Putative LRR receptor-like serine/threonine-protein kinase 23 207 - -
Accr12g00160 610 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 572 - -
Accr12g00160 610 SUPERFAMILY L domain-like 27 197 - -
Accr12g00160 610 FunFam Somatic embryogenesis receptor kinase 1 256 363 - -
Accr12g00160 610 Gene3D Phosphorylase Kinase; domain 1 256 363 - -
Accr12g00160 610 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00160 Accr-Chr12 1469055 1474479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00160 4 610 Receptor kinase-like Gene Family AT5G10290 79.242 0.0 957
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Accr12g00160 Pkinase 5.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00160 - - gmx:100793416 1072.38