Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00146 ATGAAGAGAATTGGAAGCTCATCAGATTCTTTGGGTTCTCTCCTGCCCATCTGTCCACCCACAGAACACAGCCCGAGGAACAACAATCGCGCATACAGTAGTAGGGAGTTCCAATCCATGTTGGAGGGGCTAGACGAAGAAGGATGCGTGGAGGAATTAGGCCAGCCGACGGAGAAGAAACGGCGTCTGTCGGTGGATCAGGTGAAGGCATTAGAGAAGAACTTCGAAGTAGAAAACAAGCTTGAACCTGAGAGGAAGGTGAAGCTTGCCCAAGAACTGGGATTGCAGCCCAGGCAAGTGGCTGTGTGGTTCCAAAATCGTCGAGCCAGATGGAAAACCAAGCAATTAGAGAGAGACTACGGCGTCCTCAAAGCCAATTATGATTCTCTCAAACTTAGCTACGATACCCTCAAACAAGACAATGAAGCCTTGCTCAAACAGATGAAGGAACTGAAGTCTAGATTGGAAGATAAAGAGAATAGTGAAGATGTGTCGCTGAATAATGGAGAGATGAAGCAGCCTAAGTTGGAAGAGAAAGTGATGGGAGTGGGTATGGAGCCTCCTGAGAGTGCCATTCCGGGAGTGGAGTCAGAAGAGTTAAATTACGAGTGTTTCAACGGAAACGGCGTTGTAGGAGGTTGCTCACTTTTCCCGGCAGATTTCAACAAAGACGGCTCTTCGGACAGTGACTCGAGCGCGATCTTGAACGAAGATCCAGCTGGCTCTTGTTCCTTCAAAATCAACTGTTCCTCATCATCCTTTCAGTTCCAGAAAACGTGTCAGACTCAGACTCAATATGTGAAGGTGGAAGAGCACAATTTCTTTAGCACAGACGAGGCCTGCAACTTCTTCTCCGACGAACAGGCCCCGACCCTCCAGTGGTGCTGGACTTAA 894 0.4843 MKRIGSSSDSLGSLLPICPPTEHSPRNNNRAYSSREFQSMLEGLDEEGCVEELGQPTEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDSLKLSYDTLKQDNEALLKQMKELKSRLEDKENSEDVSLNNGEMKQPKLEEKVMGVGMEPPESAIPGVESEELNYECFNGNGVVGGCSLFPADFNKDGSSDSDSSAILNEDPAGSCSFKINCSSSSFQFQKTCQTQTQYVKVEEHNFFSTDEACNFFSDEQAPTLQWCWT 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00146 297 SUPERFAMILY Homeodomain-like 40 116 IPR009057 -
Accr12g00146 297 PRINTS Lambda-repressor HTH signature 85 94 IPR000047 GO:0003677
Accr12g00146 297 PRINTS Lambda-repressor HTH signature 94 110 IPR000047 GO:0003677
Accr12g00146 297 Coils Coil 127 161 - -
Accr12g00146 297 Pfam Homeobox associated leucine zipper 114 155 IPR003106 GO:0006355|GO:0043565
Accr12g00146 297 CDD homeodomain 59 115 IPR001356 GO:0003677
Accr12g00146 297 Gene3D - 55 121 - -
Accr12g00146 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 50 296 IPR045224 GO:0003700
Accr12g00146 297 MobiDBLite consensus disorder prediction 1 31 - -
Accr12g00146 297 SMART HOX_1 57 118 IPR001356 GO:0003677
Accr12g00146 297 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Accr12g00146 297 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Accr12g00146 297 FunFam Homeobox-leucine zipper protein HAT5 52 116 - -
Accr12g00146 297 Pfam Homeodomain 59 112 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00146 Accr-Chr12 1353780 1354979 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00146 1 294 Homeobox Transcription Factor Family AT4G40060 48.052 8.15e-72 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr12g00146 Homeodomain 3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00146 K09338 - gmx:100796213 370.933