Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00145 ATGAAGAGAATTGGAAGCTCATCAGATTCTTTGGGTTCTCTCCTGCCCATCTGTCCACCCACAGAAGAACACAGCCCGAGGAACAACAATCGCGCATACAGTAGTAGGGAGTTCCAATCCATGTTGGAGGGGCTAGACGAAGAAGGATGCGTGGAGGAATTAGGCCAGCCGACGGAGAAGAAACGGCGTCTGTCGGTGGATCAGGTGAAGGCATTAGAGAAGAACTTCGAAGTAGAAAACAAGCTTGAACCTGAGAGGAAGGTGAAGCTTGCCCAAGAACTGGGATTGCAGCCCAGGCAAGTGGCTGTGTGGTTCCAAAATCGTCGAGCCAGATGGAAAACCAAGCAATTAGAGAGAGACTACGGCGTCCTCAAAGCCAATTATGATTCTCTCAAACTTAGCTACGATACCCTCAAACAAGACAATGAAGCCTTGCTCAAACAGATGAAGGAACTGAAGTCTAGATTGGAAGATAAAGAGAATAGTGAAGATGTGTCGCTGAATAATGGAGAGATGAAGCAGCCTAAGTTGGAAGAGAAAGTGATGGGAGTGGGTATGGAGCCTCCTGAGAGTGCCATTCCGGGAGTGGAGTCAGAAGAGTTAAATTACGAGTGTTTCAACGGAAACGGCGTTGTAGGAGGTTGCTCACTTTTCCCGGCAGATTTCAACAAAGACGGCTCTTCGGACAGTGACTCGAGCGCGATCTTGAACGAAGATCCAGCTGGCTCTTGTTCCTTCAAAATCAACTGTTCCTCATCATCCTTTCAGTTCCAGAAAACGTGTCAGACTCAGACTCAATATGTGAAGGTGGAAGAGCACAATTTCTTTAGCACAGACGAGGCCTGCAACTTCTTCTCCGACGAACAGGCCCCGACCCTCCAGTGGTGCTGGACTTAA 897 0.4838 MKRIGSSSDSLGSLLPICPPTEEHSPRNNNRAYSSREFQSMLEGLDEEGCVEELGQPTEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDSLKLSYDTLKQDNEALLKQMKELKSRLEDKENSEDVSLNNGEMKQPKLEEKVMGVGMEPPESAIPGVESEELNYECFNGNGVVGGCSLFPADFNKDGSSDSDSSAILNEDPAGSCSFKINCSSSSFQFQKTCQTQTQYVKVEEHNFFSTDEACNFFSDEQAPTLQWCWT 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00145 298 Coils Coil 128 162 - -
Accr12g00145 298 CDD homeodomain 60 116 IPR001356 GO:0003677
Accr12g00145 298 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981|GO:0006355
Accr12g00145 298 PRINTS Lambda-repressor HTH signature 86 95 IPR000047 GO:0003677
Accr12g00145 298 PRINTS Lambda-repressor HTH signature 95 111 IPR000047 GO:0003677
Accr12g00145 298 Gene3D - 56 122 - -
Accr12g00145 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 51 297 IPR045224 GO:0003700
Accr12g00145 298 SUPERFAMILY Homeodomain-like 41 117 IPR009057 -
Accr12g00145 298 Pfam Homeobox associated leucine zipper 115 156 IPR003106 GO:0006355|GO:0043565
Accr12g00145 298 FunFam Homeobox-leucine zipper protein HAT5 53 117 - -
Accr12g00145 298 SMART HOX_1 58 119 IPR001356 GO:0003677
Accr12g00145 298 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677
Accr12g00145 298 MobiDBLite consensus disorder prediction 1 35 - -
Accr12g00145 298 Pfam Homeodomain 60 113 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00145 Accr-Chr12 1353780 1354979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00145 1 295 Homeobox Transcription Factor Family AT4G40060 48.544 3.03e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr12g00145 Homeodomain 3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00145 K09338 - gmx:100796213 376.326