Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00135 ATGGGACTGTCCAACTTCCCCACCCCAGCAGAGGGGCTGCTTCAGGTGCTGGTCATGAACACCGTCGTGTCGGTGGCTATGTTGAAGAACATGTTGAGGTCTCTTCTGCAAGTGGTTGCTTGGAACCCAATAGACATGAATGTGGAGCAAGAGGGTGATGACGACGAGGAGACAAGTGTTTCGAGGAGGAAGGTGTCCATTACACAGTACAAGTGCATGAGTGACGGCGGAGCAAAGTGGCGCGTGGCGGAGTGCTGTGTGTGTCTCTGTGGTTTCCAAGGCAGCCAAGAGGTGAGTGTATTGTCTTGCAAGCATTTCTTCCACAGAGCTTGCTTGGACAAGTGGTTCCTCAACAGACACACCACCTGCCCTCTCTGCCGTTCCACTTCTTAA 393 0.5293 MGLSNFPTPAEGLLQVLVMNTVVSVAMLKNMLRSLLQVVAWNPIDMNVEQEGDDDEETSVSRRKVSITQYKCMSDGGAKWRVAECCVCLCGFQGSQEVSVLSCKHFFHRACLDKWFLNRHTTCPLCRSTS 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00135 130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 130 IPR013083 -
Accr12g00135 130 CDD RING-H2 85 127 - -
Accr12g00135 130 Pfam Ring finger domain 84 127 IPR001841 -
Accr12g00135 130 SUPERFAMILY RING/U-box 84 129 - -
Accr12g00135 130 SMART ring_2 85 126 IPR001841 -
Accr12g00135 130 ProSiteProfiles Zinc finger RING-type profile. 85 127 IPR001841 -
Accr12g00135 130 PANTHER - 1 129 IPR044249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00135 Accr-Chr12 1289289 1289681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00135 1 128 C3H Transcription Factor Family AT2G04240 33.333 2.35e-20 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00135 K16285 - pop:7477085 161.77