Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00115 ATGGACAACGTTGGAGGAAGTTCGTCTTCGAATAACAACGACAACAGTGGAATCAAGGAGCAGGACAGGTTGTTGCCGATAGCGAATGTTGGTCGGATCATGAAGCAGATACTGCCTCAGAACGCTAAGATATCTAAGGAGGCCAAGGAGACCATGCAAGAATGCGTGTCGGAGTTCATAAGCTTTGTGACGAGCGAGGCATCTGACAAGTGCCGGAAGGAGAGGAGGAAGACGGTGAATGGGGATGACGTATGCTGGGCCTTGGCCACGCTTGGTTTTGATGACTATGCTGACCCGCTGAGGAGGTATCTGCACAGATTTAGAGAGTTAGAGGTTGACAGAGCGAATACTAATGACCCTCATGACAGGGATGACCTCGATCAAATTCCCTCCACAGGAGTCAGGCAGTCATAG 414 0.5024 MDNVGGSSSSNNNDNSGIKEQDRLLPIANVGRIMKQILPQNAKISKEAKETMQECVSEFISFVTSEASDKCRKERRKTVNGDDVCWALATLGFDDYADPLRRYLHRFRELEVDRANTNDPHDRDDLDQIPSTGVRQS 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00115 137 FunFam Nuclear transcription factor Y subunit B-3 13 135 - -
Accr12g00115 137 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Accr12g00115 137 SUPERFAMILY Histone-fold 21 127 IPR009072 GO:0046982
Accr12g00115 137 MobiDBLite consensus disorder prediction 1 20 - -
Accr12g00115 137 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Accr12g00115 137 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Accr12g00115 137 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Accr12g00115 137 MobiDBLite consensus disorder prediction 116 137 - -
Accr12g00115 137 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Accr12g00115 137 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 9 121 IPR027113 GO:0001228|GO:0006355|GO:0016602
Accr12g00115 137 MobiDBLite consensus disorder prediction 1 19 - -
Accr12g00115 137 Gene3D Histone, subunit A 11 132 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00115 Accr-Chr12 1188349 1188762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00115 3 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 65.891 2.80e-59 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Accr12g00115 CBFD_NFYB_HMF 3.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00115 K08065 - gmx:100794513 200.29