Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00084 ATGGGTAACGGCGGCCTCAATCACAACGAACAAGATGCCAAGAGCTTCGCTCTCAGCGGCAAGATTATGCTTACCACCATCGTCATTTTATTCTTCATCGTCATCCTGATGATTTGCCTCCACCTATATGTTCGCTGCTTTCATTTACAAGCTCGCCGCCGCCAACGCCGCCACCGCCGCCGCCGCCGCTCTCACCTTGTATTCTACCAAGACTCCGCCGCCGCTCCTGTCCTGGCCTCAACGCGCGGTCTGGATTCATCTCTACTCATGTCTCTCCCCGTCTTTGTCTACTCTTCCAAGACCCACACCGAGCAGGTTGAATGCCCAGTATGCTTGTCCGAGTTCGAAGAGGGCGAAACGGGTCGAATTTTGCCCAAATGCAATCACAGTTTTCACGTTGACTGCATCGACATGTGGTTTAAGACCCACTCCACGTGCCCCACATGCAGGGCTGCTGTTGAACCCGCACCGGCAGACGCCAATCGACCTGAAGTGGTTATTACTGTGGTTGATGAACCGGAAATTCCTGAACCGGGGTCCACTTCTGGTCTGTGCTCGGAGTGCCAGCACGAAGGGAGGGATGAAGTTCGAAGTGGCCGCACGGTTTGTTCGTCGTCGTCTTCGACTGAGTTAGGGCGGAAGCCATCGTCACTGGTGGGTGTGACCTTGGAGGTGCCCAAGAGGAGCGAGAGCTTTGGAACCGAGTCGCCGTCGACTCAGTCACCGTTCAGGTCGCCAATGAGTCGCATGCTGTCGTTCAAGAGGATGCTTAGCAGAGATCGGAAAGCAAACCTTTCACCATCGGCGGGAGGCAGCGGATCTGGGAGTGAGATAGAGAAGGATGGAGGAGGGGGAGAGGAGACGCAATGA 870 0.5552 MGNGGLNHNEQDAKSFALSGKIMLTTIVILFFIVILMICLHLYVRCFHLQARRRQRRHRRRRRSHLVFYQDSAAAPVLASTRGLDSSLLMSLPVFVYSSKTHTEQVECPVCLSEFEEGETGRILPKCNHSFHVDCIDMWFKTHSTCPTCRAAVEPAPADANRPEVVITVVDEPEIPEPGSTSGLCSECQHEGRDEVRSGRTVCSSSSSTELGRKPSSLVGVTLEVPKRSESFGTESPSTQSPFRSPMSRMLSFKRMLSRDRKANLSPSAGGSGSGSEIEKDGGGGEETQ 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00084 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 156 IPR013083 -
Accr12g00084 289 MobiDBLite consensus disorder prediction 229 247 - -
Accr12g00084 289 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Accr12g00084 289 Pfam Ring finger domain 107 150 IPR001841 -
Accr12g00084 289 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 172 IPR044675 -
Accr12g00084 289 SUPERFAMILY RING/U-box 89 158 - -
Accr12g00084 289 SMART ring_2 108 149 IPR001841 -
Accr12g00084 289 CDD RING-H2_EL5-like 107 150 - -
Accr12g00084 289 MobiDBLite consensus disorder prediction 173 289 - -
Accr12g00084 289 MobiDBLite consensus disorder prediction 199 215 - -
Accr12g00084 289 FunFam RING-H2 finger protein ATL3 75 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00084 Accr-Chr12 935267 936136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00084 7 289 Rapid Response to Elicitors AT3G16720 47.573 1.21e-72 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00084 - - pcin:129320593 406.371