Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00078 ATGGACCCCTCCTCCTCCGTACCTGCCTCAGCTCCGCCAGCCGATGCCCCCGCCAATCCACCTTCTGAAGACAAACTCTCCATTGACGATAAAATATGCATAGCGATCGCCGCTCTTGGCAATGCAAATGGCTCCAGCAAGATTGCCATCGCAAAGTACCTGGAGGATACCTATGCCGACGACCTTCCTCCCAACCCCAACGACTTGCTCGCTGAGCGTTTGAAAGTCATGACAAGGGAACGTCGACTTGTTCTGGTCAAGAGGTCTTACCAGCTCCCTGATTCCCCTTCTTCTTCTTCAAGAAAACGGGGTCGACCCTGCAAGAAGCGCAAGCTCGACGAGTTGCCGCCTGATGTTCCGCTAGTTGACAACGCACAGGAAACACGTGGGCGTCCCCTCAATATACAAGAGGCCATAACGGCCGTCCCCGTCTCAATTGCCCCCCCTCCCGATTCCCCTGTACCCGCCTACGCGTTGCCACCTTCGAGAGCTTCACCACAAGCTGTTGGAGCTGGTACTAGTGGAGGGGTAAGGCCACCCCAAGATTCCCCTGGAAGTGCTGCCGGCCGGTCAAAGAAGGTAACTCCTGTTAAGGAGGAATTGAGGAGAAAACTTAAACATTTTCAATCAAAAGTCAAACAATCTACTCGTGAGATCAAGTCCCATTTACCCATTGAAAGTCTTGTCCAATTACATGTACCAATTAAAGAATTAGAAGAACTAGCAAAAATGGATCTTGATGGGCCATTACCAAATGAAACACAAGAACAGCCGCCACAGCAATAG 786 0.5127 MDPSSSVPASAPPADAPANPPSEDKLSIDDKICIAIAALGNANGSSKIAIAKYLEDTYADDLPPNPNDLLAERLKVMTRERRLVLVKRSYQLPDSPSSSSRKRGRPCKKRKLDELPPDVPLVDNAQETRGRPLNIQEAITAVPVSIAPPPDSPVPAYALPPSRASPQAVGAGTSGGVRPPQDSPGSAAGRSKKVTPVKEELRRKLKHFQSKVKQSTREIKSHLPIESLVQLHVPIKELEELAKMDLDGPLPNETQEQPPQQ 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00078 261 MobiDBLite consensus disorder prediction 146 160 - -
Accr12g00078 261 Coils Coil 198 218 - -
Accr12g00078 261 MobiDBLite consensus disorder prediction 242 261 - -
Accr12g00078 261 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 24 94 IPR005818 GO:0000786|GO:0003677|GO:0006334
Accr12g00078 261 SMART h15plus2 8 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Accr12g00078 261 Gene3D - 21 105 IPR036388 -
Accr12g00078 261 SUPERFAMILY "Winged helix" DNA-binding domain 24 103 IPR036390 -
Accr12g00078 261 MobiDBLite consensus disorder prediction 88 130 - -
Accr12g00078 261 PANTHER HISTONE H1 10 204 - -
Accr12g00078 261 MobiDBLite consensus disorder prediction 144 199 - -
Accr12g00078 261 Pfam linker histone H1 and H5 family 28 87 IPR005818 GO:0000786|GO:0003677|GO:0006334
Accr12g00078 261 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00078 Accr-Chr12 853494 855183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00078 1 104 Single Myb Histone (SMH) Gene Family AT1G49950 37.143 2.55e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00078 - - lja:Lj2g3v0677970.1 104.76