Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00062 ATGGCTTCTCACAAGAAGGTAGAAGCAGAATTTTTCACCGAATATGGAGAGGCAAGCAGATACCAGGTCCAAGAAGTCATTGGTAAAGGAAGTTATGGCGTTGTGGGTTCTGCCATTGACACTAATACTGGTGAGAAGGTTGCAATAAAGAAAATTAATGATATTTTTGAGCATGTCTCAGATGCCACGAGGATCCTTAGAGAAATTAAACTCCTTCGATTGCTCAAACATCCTGATGTAGTAGAAATTAAGCATATCATGCTTCCTCCTTCTCGACGAGAGTTTAGGGATATCTATGTCGTGTTTGAGCTGATGGAATCTGATCTTCATCAAGTAATAAAGGCAAATGATGATCTTACCCCGGAGCACCACCAGTTTTTCTTGTACCAACTTCTTCGGGGACTGAAATATATACATGCTGCTAATGTATTTCACCGTGACTTAAAGCCGAAAAATGTTCTTGCTAATGCCGATTGCAAACTAAAGAAATGTGATTTTGGGCTTGCTCGAGTTTCATTTAATGATGCTCCATCAACAATATTCTGGATGGACTATGTTGCAACTCGGTGGTATCGCGCACCTGAACTATGTGGTTCATTTTTCTCAAAATATACCGCCGCAATTGATATTTGGAGCATTGGATGCATTTTTGCAGAAATTCTCTTGGGGAAGCCATTGTTTCCTGGGAAAAATGTGGTGAACCAGTTGGATCTCATAACTGACTTACTTGGGACTCCTCCTGCTGAATCCATTGCGAGGATTCGAAATGAGAAGGCTAGAAGGTATCTTAGTGGCATGCGTAAAAAGAAACCAGTTCCATTTTCCCAAAAGTTCCCTACTGCTGATCCTTTGGCTCTTCGTTTGCTGCTGCGCCTGCTTGCATTTGATCCTAAGGATCGTCCAACTGCTGAAGAGGCTTTATCTGATCCTTACTTGAGAGGGTTATTGAATGTGGATCGTGAACCATCTACTCAACCCATTTCAAAACTAGAATTTGAGTTCGAGAGGAGAAAAGTGACTAAAGATGATGTTAGAGAGTTGATTTATCGAGAGATTCTAGAGTATCATCCGCAGATGCTTGAGGAATATCTTTGTGACGGAGAGCAGACCAGTTTTATGTATCCAAGTGGGGTTGACCGGTTCAAGCGACAGTTTGCACATCTTGAAGAGCATTATGGCAATGGTGAGAAGGGCATTCCATTGCTGAGACAGCAGGCATCCTTGCCTCGAGAGCGAGTTAGTGGAGGCAAGGATGAAAAGAATGAGGGGGATTTAGAAAAGCATGCGGGAGCTGGTATTGAAACAAGTGTTCAAGGTGCTTCCAGGTCTAATGGGACAGATGCTGATTCTCAAAATGGTCTCTCCAATGCCATCAATACGCGTGGCTTGTTCAAGAGTGCCAGCATTAGTGCATCCAAGTGCATAGGAGTGAAACCACACAACCACCTCAAGGAGGAGCCAATCGAGGAGTTGAGTGATGAGTTGACAGAGAAGATGGATGTCCTCAATTAA 1512 0.4299 MASHKKVEAEFFTEYGEASRYQVQEVIGKGSYGVVGSAIDTNTGEKVAIKKINDIFEHVSDATRILREIKLLRLLKHPDVVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHAANVFHRDLKPKNVLANADCKLKKCDFGLARVSFNDAPSTIFWMDYVATRWYRAPELCGSFFSKYTAAIDIWSIGCIFAEILLGKPLFPGKNVVNQLDLITDLLGTPPAESIARIRNEKARRYLSGMRKKKPVPFSQKFPTADPLALRLLLRLLAFDPKDRPTAEEALSDPYLRGLLNVDREPSTQPISKLEFEFERRKVTKDDVRELIYREILEYHPQMLEEYLCDGEQTSFMYPSGVDRFKRQFAHLEEHYGNGEKGIPLLRQQASLPRERVSGGKDEKNEGDLEKHAGAGIETSVQGASRSNGTDADSQNGLSNAINTRGLFKSASISASKCIGVKPHNHLKEEPIEELSDELTEKMDVLN 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00062 503 SMART serkin_6 21 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00062 503 Pfam Protein kinase domain 21 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00062 503 SUPERFAMILY Protein kinase-like (PK-like) 17 317 IPR011009 -
Accr12g00062 503 ProSitePatterns MAP kinase signature. 56 159 IPR003527 GO:0004707|GO:0005524|GO:0006468
Accr12g00062 503 MobiDBLite consensus disorder prediction 406 454 - -
Accr12g00062 503 MobiDBLite consensus disorder prediction 478 503 - -
Accr12g00062 503 FunFam Mitogen-activated protein kinase 10 115 - -
Accr12g00062 503 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 20 360 - -
Accr12g00062 503 CDD STKc_TDY_MAPK 20 357 - -
Accr12g00062 503 FunFam Mitogen-activated protein kinase 107 335 - -
Accr12g00062 503 ProSiteProfiles Protein kinase domain profile. 21 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00062 503 MobiDBLite consensus disorder prediction 412 429 - -
Accr12g00062 503 ProSitePatterns Protein kinases ATP-binding region signature. 27 51 IPR017441 GO:0005524
Accr12g00062 503 MobiDBLite consensus disorder prediction 475 503 - -
Accr12g00062 503 MobiDBLite consensus disorder prediction 436 454 - -
Accr12g00062 503 FunFam Mitogen-activated protein kinase 336 358 - -
Accr12g00062 503 Gene3D Phosphorylase Kinase; domain 1 37 358 - -
Accr12g00062 503 Gene3D Transferase(Phosphotransferase) domain 1 107 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00062 Accr-Chr12 627355 631184 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00062 7 503 MAP Kinase Gene Family AT3G18040 77.645 0.0 781
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Accr12g00062 Pkinase 3.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00062 - - cpep:111793155 794.653