Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00057 ATGGGTATCAAGGATCTTCTCCGATTCATGAAGCCCTATATCGAACCCATTCACATCAACAAATATGCCGGACAACGCGTTGGTATTGATGCTTATTCATGGCTTCATAAGGGAGCTTATTCCTGTAGTATGGAGCTTTGTCTGGATTCTCATACTGAAAAGAAGTTCCAATACATAGAGTACTTTATCCATAGAATCAAGCTGCTTCGCTACTATAAGATAACGCCGGTTGTTGTTTTTGATGGCGGCAACATTCCTTGCAAGGCAGCAACGGAGGAAGATAGGAAGAGAAAGCGAAATGCTAATCGCGATTTGGCAATGGCTAAGCTCAAAGAGGGAAACGTCAATGCAGCCTCAGAGTTATTTCAGAGAGCATTGAACGTCACTCCCATTATGGCTTATCAATTGATTCAGGTTTTGAGATCAGAGAACATTGAGTTTGTTGTAGCCCCTTATGAAGCAGATGCTCAGTTAGCATACTTGTCCAAGATTAAAACAGAAAAGGGCGGTGTTGTAGCTGTGATCACTGAGGATAGTGATCTAATTGCCTACGGTTGTCCAGCTATTGTCTTTAAGATGGACCGATACGGGAATGGTGAAAGCATAGAGTTAGACAAGGTTTTTAAAGCTGAGACTTGTAAACCATCCTTCCGAAATTTTGATCTGGAACTTTTCACAGGTATGTCTGTCTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGTATTGCGCGAGCTCATGCCTTAGTTTCCAAGTATCGGAATTTAGATCGTGTGTTATCTGTTCTTAAGATGGAGAAGGGCAATCAAGTGCCAGAAGATTACGCCAAATCCTTCAAAGAGGCAATTGCAGTCTTCCAGCATGCTCGAATATATGATCCCACTGCTAAGGAGCTCAAGCACCTCACGCCACTTCCGCAAAGCCTTCTTCAGTCCTTTGATGGAAATCTTGATTTTTTGGGACCAGAAATTCCTCTAGAAGTAGTTACCGCAATAGCAGAAGGCAACTTAAATCCTTCAACCAAGAAAGCCTTTGATAAACTCGAATGTTCCGGACTCCCCGTGCACCCGATTGTCCTCAAGAGCAATCGCCAACACCTGAAAGTCCAAGTTTCTGCAGCATCTACACAGAAGCGCTCGTTCAAAGTCTTTGACTCCCATAATGCCAGAGAAAACAGTACAGTGACAACGTCGAATCTGGTCGCGAACAAGGACAAATATTCTGGTGAAGCGTGGGCACTTCAGAAACTTGTTAGGCCGTTGGTAACTTGTGGAAACGCAGAAAAGGAAAATATTCCTGATGAAATTCCGTTAAAGGTTCCTGACAACAACCCATTTAGGATAAAACCTGAGGAAATTTGTTTATTTCAGAGGGAAAACCCCGATGAACAAGTTCTTGTTACCGGGAGTGAGGAATATATGGACGTGTGCATGAATCTTGATAGCTTTCCGGAAGGGAGGTCTGAAAATCTCTCGAGGAAAAGGAATTTTCAGAGCATTTGCTCAGATCAAGCAGAAGCTTGCGACGACCAAATTTCAGAGGTGACGGTGATTGAAGCAGAGGATCCAGATATGTTATGTTGGAACGTGAAATCCCAAGAAAGTATAAATTCTATGACAGTAAAACGCATTGATTTGAAAAGAAGAGGTGCAAGTGCAAAGAAATCCAAGAAAAGCAGTGGCAAGAAAACAGGGAGTAAGAACAGTAGTATCTTGAATTTCTTTTCTCGAGTGTAA 1743 0.4251 MGIKDLLRFMKPYIEPIHINKYAGQRVGIDAYSWLHKGAYSCSMELCLDSHTEKKFQYIEYFIHRIKLLRYYKITPVVVFDGGNIPCKAATEEDRKRKRNANRDLAMAKLKEGNVNAASELFQRALNVTPIMAYQLIQVLRSENIEFVVAPYEADAQLAYLSKIKTEKGGVVAVITEDSDLIAYGCPAIVFKMDRYGNGESIELDKVFKAETCKPSFRNFDLELFTGMSVLAGCDFLPSVPGIGIARAHALVSKYRNLDRVLSVLKMEKGNQVPEDYAKSFKEAIAVFQHARIYDPTAKELKHLTPLPQSLLQSFDGNLDFLGPEIPLEVVTAIAEGNLNPSTKKAFDKLECSGLPVHPIVLKSNRQHLKVQVSAASTQKRSFKVFDSHNARENSTVTTSNLVANKDKYSGEAWALQKLVRPLVTCGNAEKENIPDEIPLKVPDNNPFRIKPEEICLFQRENPDEQVLVTGSEEYMDVCMNLDSFPEGRSENLSRKRNFQSICSDQAEACDDQISEVTVIEAEDPDMLCWNVKSQESINSMTVKRIDLKRRGASAKKSKKSSGKKTGSKNSSILNFFSRV 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00057 580 Gene3D - 1 213 - -
Accr12g00057 580 FunFam exonuclease 1 218 291 - -
Accr12g00057 580 CDD H3TH_FEN1-like 223 295 - -
Accr12g00057 580 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Accr12g00057 580 SMART xpgn3 1 102 IPR006085 GO:0004518
Accr12g00057 580 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Accr12g00057 580 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 221 349 IPR036279 -
Accr12g00057 580 Gene3D - 218 291 - -
Accr12g00057 580 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Accr12g00057 580 MobiDBLite consensus disorder prediction 565 580 - -
Accr12g00057 580 ProSiteProfiles TPR repeat profile. 99 132 IPR019734 GO:0005515
Accr12g00057 580 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 528 IPR006084 -
Accr12g00057 580 MobiDBLite consensus disorder prediction 550 564 - -
Accr12g00057 580 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Accr12g00057 580 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Accr12g00057 580 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Accr12g00057 580 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Accr12g00057 580 FunFam Exonuclease 1, putative 1 214 - -
Accr12g00057 580 SMART xpgineu 141 213 IPR006086 GO:0004518
Accr12g00057 580 CDD PIN_EXO1 1 209 IPR044752 GO:0046872
Accr12g00057 580 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Accr12g00057 580 MobiDBLite consensus disorder prediction 549 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00057 Accr-Chr12 585150 589361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00057 1 313 Core DNA Replication Machinery Family AT5G26680 25.846 2.61e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00057 K10746 - gmx:100817932 751.895