Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00044 ATGCCTCATGCCGCAGATGCTTCAGAATCACGGCACATCAAATGCAGGACCCAGTTCGCGCGTCTCATTTACCAAACAGATCCCGACCCACAAATCCCTTCCCTGCCTCAATCCACTCGCTCCAAACCCACCATTTCCTCTATCCTCTCTGCCCCCTCCCCCGACACTTTTGGTGAATCCTCACAGCCCGGACTCAACACCAACAAGAAGAAGCCAAGTTTCTCCGCCGCAACCTTCAGAGGATTCGGATGCAAGGCGGGCGCCTCGCGCCAGGTATCGCTTCCGGCGGTCATTCGGACTTCGGCTGATTGGCAACACACCAAAGCCAGAAAGAAGAGGGATGGGGCAGACAACTGGGTGAGCGGTCAAGGCGTTCTTGATGGTTCAAATCCTGGTTCCGTTACTTGTGTTGCTTTTCAAGATGCTTGGTGTGGCCCTGGAATTGGGTTTGCGGCGGATGTTGCTGCCCCTGCGGATTGCGTTGTCGTCAGGAAGAATGGCCCTACCAGAGGGAAGACTGATTTGGAGAAGGTGACCCACAGCCACGGGGAGCGATTAACGAGTCGCCTTGAGTCCTTTGGTACTGCAGGATCCTATCGCCATGTTCCACTTCCTTCCTCTCGTAACTTTGCTGGGATCACGCTGCTTCAAGGGACTCTGACGATGGGGGCAAGATTGAATTCTCGCGACCACTTTAGAGACTGGAGACTTGATACTGATAACATGTCCTATGAGCAATTGCTGGAGCTTGGTGAGAGAATTGGCTATGTGAACACTGGGCTTAAAGAAGATGAGATGGGACGTTACATTAGGAAATTTAAGCTTTCCAAGTTTAACGAGACTTCAAAACGTCAAGTTGACAACAAATGCAGCATTTGTCAGGAAGAATATGAAGCTGATGATGAGGTGGGAAGGCTAAGTTGTAAACACGACTATCACTTTCAGTGTCTAAGGCAATGGCTCGCACAGAAAAATTGCTGCCCTGTGTGTAAGCAAGAAGTTGCGAGTCATCACTCCGGGGCCTAA 1026 0.5107 MPHAADASESRHIKCRTQFARLIYQTDPDPQIPSLPQSTRSKPTISSILSAPSPDTFGESSQPGLNTNKKKPSFSAATFRGFGCKAGASRQVSLPAVIRTSADWQHTKARKKRDGADNWVSGQGVLDGSNPGSVTCVAFQDAWCGPGIGFAADVAAPADCVVVRKNGPTRGKTDLEKVTHSHGERLTSRLESFGTAGSYRHVPLPSSRNFAGITLLQGTLTMGARLNSRDHFRDWRLDTDNMSYEQLLELGERIGYVNTGLKEDEMGRYIRKFKLSKFNETSKRQVDNKCSICQEEYEADDEVGRLSCKHDYHFQCLRQWLAQKNCCPVCKQEVASHHSGA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00044 341 MobiDBLite consensus disorder prediction 25 72 - -
Accr12g00044 341 SUPERFAMILY RING/U-box 284 336 - -
Accr12g00044 341 Pfam Ring finger domain 288 331 IPR001841 -
Accr12g00044 341 MobiDBLite consensus disorder prediction 30 72 - -
Accr12g00044 341 FunFam E3 ubiquitin-protein ligase rnf12-A 257 336 - -
Accr12g00044 341 ProSiteProfiles Zinc finger RING-type profile. 290 331 IPR001841 -
Accr12g00044 341 SMART ring_2 290 330 IPR001841 -
Accr12g00044 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 340 IPR013083 -
Accr12g00044 341 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 71 335 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00044 Accr-Chr12 442878 445344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00044 33 245 C3H Transcription Factor Family AT1G73760 35.686 8.59e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00044 - - pcin:129320004 489.574