Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00041 ATGCCGATCTTCTCCTTTATATCTCAATGTTTCGTCCCCAGTGGAAGTGAAAACGATGCTTCGACCCCTAAGAATTGGGAGGTGAAGTGTAATCAGATAGTAAGTGTGAATGTTGAGGCAACAAGCAGCCGTTGCAGCCCCGTCCAATCAGTGCCTGTGGTTTCTGGAGCACCGATCAGCCATGTTCGATCTGAGGTAATGAGCAGCCACGACAACAGAATTAAAATTTTCAAATATTCTGAACTTAAAATAGCAACCGACAATTTTGACTCCGAAAGAGAGCTTGGAAGAGGAAAACACGGGACAGTATACCTTGGAATTCTCAAAGATGGGCATTCTGTCGCAATAAAGCAGTTACATGAAGACAAGTTAAAAGCCCTGAGGCTGCATGATGAGAAACTCCACAGCGAGAAAGTGGAAAAGTTTATGAGTGAAGTTTCATTGTTAACTTCTGTGAGGCATGAAAACCTTGTCCGACTATACGGCTGCATCTCTTCTCAAAGCGGTGAACTACTTCTAGTGCAAGAATTCATGCCCAAAGGAGATCTTACTAAATGTCTTCTTGATTCTCTGCGGCAACCCGGTTCACTCCCTTGGCATACCCGGTTAAATATTGCAATACAAACAGCAAGTGCATTGGCGTATCTCCATTCTCTTAATATAATACATCGTGATGTGAAAACCAGCAATATTCTGCTTGACCATTGTTTCAATGCTAAAGTTGCTGACTATGGATTGTCACATGTTTTCCCACTAGGTTTTGTTACCCATATCACAACTGATCCTGAGGGGACTCCTGGTTATATTGATCCAGAGTATTATGAGCGTTGCCATCTTTCTGATAAGAGTGATGTATATAGCTATGGAGTGGTGCTGATTGAGCTGATATCGTCCCTACCAGCATTTGGTGAGGATGATGACCATCCCCGCCTTTCTGATTATGCTGTCAGTAAAATTCGAGGCAGACAACTTGGAAGCCTGGTAGATCCTGCTCTTGGATTTGAATTAGATGACTGGATAACTCGAACAATTAGTGCAATGGCAGAGTTGGCATGTAGCTGTTTGCAACGCCACAGAGACAGGAGACCTTCCATGGCTGAAGTGTTGGATAGGCTTAAGAGCATTAAAAGTTCGAGAACTGGAAGTTCTCTTTCCTGGTCTCCAAATAGTTTGTAA 1176 0.4311 MPIFSFISQCFVPSGSENDASTPKNWEVKCNQIVSVNVEATSSRCSPVQSVPVVSGAPISHVRSEVMSSHDNRIKIFKYSELKIATDNFDSERELGRGKHGTVYLGILKDGHSVAIKQLHEDKLKALRLHDEKLHSEKVEKFMSEVSLLTSVRHENLVRLYGCISSQSGELLLVQEFMPKGDLTKCLLDSLRQPGSLPWHTRLNIAIQTASALAYLHSLNIIHRDVKTSNILLDHCFNAKVADYGLSHVFPLGFVTHITTDPEGTPGYIDPEYYERCHLSDKSDVYSYGVVLIELISSLPAFGEDDDHPRLSDYAVSKIRGRQLGSLVDPALGFELDDWITRTISAMAELACSCLQRHRDRRPSMAEVLDRLKSIKSSRTGSSLSWSPNSL 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00041 391 PIRSF ILK 38 388 - -
Accr12g00041 391 SMART serkin_6 89 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00041 391 SUPERFAMILY Protein kinase-like (PK-like) 66 372 IPR011009 -
Accr12g00041 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Accr12g00041 391 Gene3D Phosphorylase Kinase; domain 1 60 177 - -
Accr12g00041 391 Gene3D Transferase(Phosphotransferase) domain 1 178 385 - -
Accr12g00041 391 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 68 379 IPR044652 GO:0004672
Accr12g00041 391 Pfam Protein kinase domain 90 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00041 391 ProSiteProfiles Protein kinase domain profile. 89 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00041 391 ProSitePatterns Protein kinases ATP-binding region signature. 95 117 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00041 Accr-Chr12 426597 428461 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00041 73 377 Receptor kinase-like Gene Family AT1G25390 48.377 5.52e-90 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Accr12g00041 Pkinase 3.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00041 - - tpra:123887372 424.091