Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00040 ATGGCCATGGACGTCCAGTTGCATTCTTATGCTTTCTTCCTTCCCTGCATGATATTCACCATCTCCATCTTCTCAGCAGAATCACAGAGGCACGGCGAAGCCACCACCAATTACTCTGCCTGTAATCAAGCTTACAATTGTGGAAATATCAGCAACATCGTTTACCCTTTCTGGGGACAGAATCGACCTATTTATTGTGGCGGCGGCAATCGATTCAAGCTCACTTGCCACAATAATAAGACTTCCATCACAGTAGGCCAACAGGATTTCATGGTGGTTTCCATTAACCCAGAATTTCACTCCATGAGATTGGTACAAACTGCTCTCTCTGTTTCTTGTCCATGGAACTTCACGAACACTTCCTTGGATCCTGCTCTCTTCCGCTACGATAACTTAACAATTCAAAGCTTGTCTGTATTCTACAAGTGCCCTCGTCATGTTTCAAGCCCAAGCAACATCATTTGCAAAAGTGCTGTTGCTTTCTTCGCCAGGCAGGATGAGACGCATAAGTTGCAAAATTTTTCTGAATGCAAGGCTCATAATCAAATTCTAGTACAAGGCGAGATTCCCGACGTTGAAGACAAGGATTGGCTGAATAAATCTGTGAGCAAAGGGTTCGTAGTTCAATATAATGTAAACTGGTTTCCCTGCCTGGCATGCAATTCATCGGGAGGAATATGTGGGGCTGACATCCATAACGCTTCTCGATTTGCCTGTTATTGCGGGAACAGAGTTCGTCCTTATTCTTGTCCAAAAAACAGACATTGGAACTGGAAAGGGAAACTCATAGCAGGTGCTGCTGCTTCTTCATTCAGTGTGATCGTTCTGAGCACTGCTTTTTATTTCTATCTCCGCCAAAAGAAGAATCGTCATGCCAAATCAGACAAACAATCTCATCAGAGTCGGACCATATCTTCCGATTCCTCTATAAACGATGCTGAGAATAAAGAAAGGAAATACTTTGGAGTCCACCTCTTCTCATATGCCGAACTTGAAAAGGCCACTAACAATTTTGATTCTGCCAATGAACTTGGAGATGGGGGTTTCGGAACAGTTTATCGGGGAAAACTGGTGGATGGTCGTACAGTTGCAGTGAAGAGATTGTATGAAAACAATGATAAGAGAGTTGAGCAGTTTATGAATGAAGTGGAGCTCTTAACTCGTCTGCACCACCAAAACCTTGTCCAACTTTATGGTTGCACCTCTCGCCATAGCCGTGAACTTCTGCTTGTATATGAATACGTTCCTAACGGAACCGTCGCCGATCATCTTCACGGCCAAAGAGCGAAACCAGCAGACACAGTAATCCCCTGGCACACCAGAATGAACATAGCCATAGAGACTGCAAGTGCACTGGCATATCTTCACTCATCTGACATCATCCACCGTGATATAAAAACGACCAACATCCTTCTTGACAATCATTTCGTTGTCAAAGTAGCAGATTTTGGACTTTGTCGTCTCTTTCCAAATAATGTCACCCACATTTCAACAGCGCCACAGGGAACCCCTGGGTACGTGGATCCAGAGTACCATCAGTGTTACCAGCTTACTGATAAGAGTGATGTGTATAGTTTTGGAGTGGTGCTCATTGAGCTGATATCATCAATGCCTGCTATTGACATCACGAGGCATAGGAATGAGGTGAATTTGGCGTCCATGGCTATTAACAAGATACAGAGTGGGGATTTGCATGAGCTTGTGGACCCAACTCTTGGGTTTGAAGAAGATGACGGAGTGAGGAAGATGATAAATGGAGTGGCAGAGTTGGCATTCCAGTGCTTGCAGGGTATGAAAGACACGAGGCCGTCCATGGAAGAGGTGGTGGAGAGGTTGAAGGAACTACAAAAAGAAGGGGTAGGCAAAACAAAAGAAGAAGAGATGGAAATGGAAATGGTGTCAGCAGATCATGTGGTGTTGCTCAAGAATGAAGTGCCTCCGCTCTCACCTGATTCAAATATGAGGAGCACAGGGACGACCCCAAATGCCAGTGGATAA 1998 0.4469 MAMDVQLHSYAFFLPCMIFTISIFSAESQRHGEATTNYSACNQAYNCGNISNIVYPFWGQNRPIYCGGGNRFKLTCHNNKTSITVGQQDFMVVSINPEFHSMRLVQTALSVSCPWNFTNTSLDPALFRYDNLTIQSLSVFYKCPRHVSSPSNIICKSAVAFFARQDETHKLQNFSECKAHNQILVQGEIPDVEDKDWLNKSVSKGFVVQYNVNWFPCLACNSSGGICGADIHNASRFACYCGNRVRPYSCPKNRHWNWKGKLIAGAAASSFSVIVLSTAFYFYLRQKKNRHAKSDKQSHQSRTISSDSSINDAENKERKYFGVHLFSYAELEKATNNFDSANELGDGGFGTVYRGKLVDGRTVAVKRLYENNDKRVEQFMNEVELLTRLHHQNLVQLYGCTSRHSRELLLVYEYVPNGTVADHLHGQRAKPADTVIPWHTRMNIAIETASALAYLHSSDIIHRDIKTTNILLDNHFVVKVADFGLCRLFPNNVTHISTAPQGTPGYVDPEYHQCYQLTDKSDVYSFGVVLIELISSMPAIDITRHRNEVNLASMAINKIQSGDLHELVDPTLGFEEDDGVRKMINGVAELAFQCLQGMKDTRPSMEEVVERLKELQKEGVGKTKEEEMEMEMVSADHVVLLKNEVPPLSPDSNMRSTGTTPNASG 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00040 665 SUPERFAMILY Protein kinase-like (PK-like) 318 612 IPR011009 -
Accr12g00040 665 Gene3D Transferase(Phosphotransferase) domain 1 415 640 - -
Accr12g00040 665 SMART serkin_6 338 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00040 665 Gene3D Phosphorylase Kinase; domain 1 308 414 - -
Accr12g00040 665 FunFam receptor-like serine/threonine-protein kinase NCRK 313 414 - -
Accr12g00040 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Accr12g00040 665 Pfam Protein kinase domain 340 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00040 665 FunFam Wall-associated receptor kinase-like 20 415 625 - -
Accr12g00040 665 CDD STKc_IRAK 344 615 - -
Accr12g00040 665 Pfam Wall-associated receptor kinase galacturonan-binding 41 105 IPR025287 GO:0030247
Accr12g00040 665 MobiDBLite consensus disorder prediction 649 665 - -
Accr12g00040 665 Pfam Wall-associated receptor kinase C-terminal 165 243 IPR032872 -
Accr12g00040 665 ProSiteProfiles Protein kinase domain profile. 338 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr12g00040 665 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 18 662 IPR044652 GO:0004672
Accr12g00040 665 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Accr12g00040 665 MobiDBLite consensus disorder prediction 643 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00040 Accr-Chr12 420145 424535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00040 35 665 Receptor kinase-like Gene Family AT1G25390 43.827 3.30e-152 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Accr12g00040 Pkinase 2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00040 - - qsa:O6P43_008550 671.774