LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr12g00038	ATGGCGACCAAGCGTTTCTTCGAAGGCAACTCTGATGATCAAAACCCAGATGAACCCCCTCATCAACGCTTCAGACCCACTCTCTCTTCGGTGATCGGAGAAGTGGTTATGGTCAGAAACTTGCAGAACCTTCTCTCTGGCTTGGAACCTTTGCTCAGAAGGGTGGTGAGTGAGGAGGTGGAGGGAGTGATGAGACACATGTATCCGAGATCGATGATGACGAGGTCAGCGTCGTTGAGGATACAAGCAGCAGAGGAAGCACCAAACCTACAACTAAGCTTTAAGGAAAGGCTGAGCATCCCTATTTTCACGGCAAGCAGGATACAAGACGTGAATGGCAACCCACTCCAGGTGATTCTTGTCGACAAAAGTGGCGATCGAAGTGTTCCGACGAGTGTGCCTTATCCCTTGAAGCTTGAACTTGTGGTTCTCGACGGAGATTTCCCACCGGCCGATAAGCAAGAATGGACGACCCACGAATTCAACAGCCACTTAGTGAAGGAGAGAGCGGGAAAGCGACCCTTGATCGCCGGATCGGAACTCAACATTTCCATGAGAAATGGGATTGCATGTTTGGGTGGCGACATTGAATTTACGGATAACTCTAGCTGGATCAGGAGTAGGAAGTTCAGAGTTGCTGTCAGAGTGGCTCCTGGAACCCATCAAGGTCCTAGGGTTCTTGAAGGCTTCACCGAATCTTTTGTCGTCAAGGATCATCGAGGCGAATTGTATAAGAAACACCATCCACCGATGTTGGAAGACGACGTGTGGCGGCTGGAGAAGATTGGGAAGGATGGGGCATTTCACAGGAAGTTGTCGTCAAATGGTATTAACAATGTTCAGCAGTTCCTCAAGTTGTCCGTGGTTGATCCTGCAAGACTCAAAGAGATATTGGGGATAGGGATGTCAGAGAAAATGTGGGAGGTAACATTGAAGCACGCGAGGAGCTGTAAGATGGAGAACAAGCTCTACATATACCGGCCGGGGCCTAACTGTGCCGTGTTTCTGAATCCCATCTGCCAAGTGGTTAGAGCTCACATCAATGGCCACATCCTGTATGGCACTGACCTCAAAAACATCAACAAGAGCTATCTTGAGAAGCTGGTGAGAGAAGCATACGCCAGATGGGACACCTTGGAGAAAGCAGCCCCCGAAGATTTCTTGAATGATGATGCTTCCTTGTTAACTCAAGGGGAAACAGTGGAGAGCCATCATCAAGCACCAGTGGGCAGTTATGGAGGCAGTAGTGAGTGGTCGACGTTGAATCACAATTCAACATATGCCGCCGTACAGGAGAATGGCTTTCCGTTCAGCTTCTCGGAGTCACAACCAGATGTTGATAACATGACACCATCAGGCTCTATCATTCAAGCTATAAACATAACACATGTAAGTGCTGCTGCGGATGCATTCGATCTGGGACTTCGAAGACCACGGGATGGAGGTTTTAAAAAGGTGATGCTATTCTGTGATTCAGCGGATCAACGGACTACGAACTCCACAAGAACAGGGATTTAA	1518	0.4868	MATKRFFEGNSDDQNPDEPPHQRFRPTLSSVIGEVVMVRNLQNLLSGLEPLLRRVVSEEVEGVMRHMYPRSMMTRSASLRIQAAEEAPNLQLSFKERLSIPIFTASRIQDVNGNPLQVILVDKSGDRSVPTSVPYPLKLELVVLDGDFPPADKQEWTTHEFNSHLVKERAGKRPLIAGSELNISMRNGIACLGGDIEFTDNSSWIRSRKFRVAVRVAPGTHQGPRVLEGFTESFVVKDHRGELYKKHHPPMLEDDVWRLEKIGKDGAFHRKLSSNGINNVQQFLKLSVVDPARLKEILGIGMSEKMWEVTLKHARSCKMENKLYIYRPGPNCAVFLNPICQVVRAHINGHILYGTDLKNINKSYLEKLVREAYARWDTLEKAAPEDFLNDDASLLTQGETVESHHQAPVGSYGGSSEWSTLNHNSTYAAVQENGFPFSFSESQPDVDNMTPSGSIIQAINITHVSAAADAFDLGLRRPRDGGFKKVMLFCDSADQRTTNSTRTGI	505

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr12g00038	505	PANTHER	OS02G0177800 PROTEIN	1	425	IPR012416	GO:0005516
	Accr12g00038	505	Pfam	Calmodulin binding protein central domain	251	317	IPR046830	-
	Accr12g00038	505	Pfam	Calmodulin binding protein-like N-terminal domain	90	239	IPR046831	-
	Accr12g00038	505	Pfam	Calmodulin binding protein C-terminal domain	322	381	IPR046829	-
	Accr12g00038	505	MobiDBLite	consensus disorder prediction	1	24	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr12g00038	Accr-Chr12	412331	415441	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr12g00038	1	428	Calmodulin-binding Proteins	AT2G18750	42.478	1.10e-111	342

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr12g00038	-		-	qsa:O6P43_005112	521.931