Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00032 ATGGCTGAGTTTACCACATATTTGCAAGCCTTAAGGTCACCTTTTCATTTCTTAGATATTGATTCAAGCATGGAACTGATGAACCAATTCACAGGGATGAGTCCACGTGTCTTGGACAACTCTAATCTTAATTTTCAGAGCTTCATGCCTTTGTCCTGTGACACCTCCTTAGGCTTCCCTGAGCCTCAATTTGAAGGAAAATTGGAGGAAAGTTTTCCTAGCCTTGTCCATCAGGTCAATCACAATGCTTTACCAGTTTCTTCGCCCAATTTTCCCGAGGAAAATGAAATCCATGAAAGTAAAAAGAGGAAGCCAACGAATGTGCCAGAGACCAGTTCTACTAATTCAACTTCTGCAGTTCTTGAGAGTGGAAGCAAAATGAAAAATTGTTCCAGAAGAAGTAAGAGAGTAAAAAGCAGTGAAACAAATGTGGACAATTCAAAAGAAGTGGTTCATGTCAGAGCCAAAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAGAAGTTAAGGTGCTTACAGAACATTGTCCCAGGATGCTGCAAGACTATGGGTATGTCAATAATGTTGGACGAGATCATAAACTATGTCCAATCCTTGCAGCGTCAAGTGGAGTTCCTCTCCATGAAGCTTACTGCAGCAAGCAATTTCTATGACTTCAATTCAGAGACAGATGCTTTGCAAACATTGCAGAGAGCAATGGCAGCTGAGGCAAAAGAGTTATCCAAACATGGGAGAGAAGACTGCGTAGGAGTTTCTTGTTTTCAACCAACCTGGCCCTTCTGA 813 0.4157 MAEFTTYLQALRSPFHFLDIDSSMELMNQFTGMSPRVLDNSNLNFQSFMPLSCDTSLGFPEPQFEGKLEESFPSLVHQVNHNALPVSSPNFPEENEIHESKKRKPTNVPETSSTNSTSAVLESGSKMKNCSRRSKRVKSSETNVDNSKEVVHVRAKRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCCKTMGMSIMLDEIINYVQSLQRQVEFLSMKLTAASNFYDFNSETDALQTLQRAMAAEAKELSKHGREDCVGVSCFQPTWPF 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00032 270 Gene3D - 156 228 IPR036638 GO:0046983
Accr12g00032 270 Pfam Helix-loop-helix DNA-binding domain 163 210 IPR011598 GO:0046983
Accr12g00032 270 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 209 IPR011598 GO:0046983
Accr12g00032 270 MobiDBLite consensus disorder prediction 107 127 - -
Accr12g00032 270 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 226 IPR036638 GO:0046983
Accr12g00032 270 SMART finulus 165 215 IPR011598 GO:0046983
Accr12g00032 270 MobiDBLite consensus disorder prediction 83 145 - -
Accr12g00032 270 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 87 237 IPR024097 GO:0006355
Accr12g00032 270 CDD bHLH_AtBPE_like 149 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00032 Accr-Chr12 329148 330619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00032 38 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 49.600 2.10e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr12g00032 HLH 0.00012 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00032 - - gmx:100806942 360.533