Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00028 ATGGAGGAAAAGCTACCACCTGGGTTCAGATTCCATCCGACAGACGAAGAGCTGATCACATATTACCTGACGAGGAAGGTGTGTGAAAGCAGCTTCACATGCAAAGCGATGGCAGAAGTTGATATGAACAAGAACGAGCCGTGGGATCTGCCGGGGAAAGCGTCGATGGGAGAGAAAGAATGGTATTTCTACAGCCTGAGGGACAGGAAGTACCCGACGGGGCTGAGAACAAACAGGGCGACGGAAGCAGGGTACTGGAAGACAACCGGCAAAGACAAAGAAATCATGAAGGATGGGGCTATCATGGTTGGAATGAAGAAAACACTCGTCTTCTACAAGGGCAGGGCTCCCAGGGGTGAGAAAAGCAACTGGGTTATGCACGAGTATCGCCTCCACAATAACCACTCCTTTAGGGCTTCCAAGGAAGAATGGGTGGTGTGCAGGGTGTTCCAGAAAAGCTCGTCAGCGGCAAAGAAAGCACAACAGACGTCATCCTCACAAGTATCTCTGGACTCTCCTCCTCATGATGATGCCTCTTTGCTCCATGAATTCGGCGACGTTACTGACCTCCCCAATTTAAACACCATCACCCCAACAAATCCATCAACCACCAACGTGAACTGGCCACCACCTGCTTCTGATCACCGCCTTCCCTCTCTTCCGTCCCTCCCATGGCCCTCTGGTTTGCTCAATCCAAACCTTTCTGTGAATTCCTTGCTTCTCAAGGCATTGCAGCTTCGCACCTGTCAGCAAAGAGAAATTGCAGCCATGACCGATCATTACATGCCGCCTCAAGGAATTTCTCGAGTAATGGAGACTACTCATCATCTCACCCCAAATCTCACGCTGGAAGCTTCTTCCTCATCCAAGGTTTTACACGATATGCCACAGCAACAGCAGGAGCAACCATTCAATCTGGACTCCATTTGGTGA 933 0.5027 MEEKLPPGFRFHPTDEELITYYLTRKVCESSFTCKAMAEVDMNKNEPWDLPGKASMGEKEWYFYSLRDRKYPTGLRTNRATEAGYWKTTGKDKEIMKDGAIMVGMKKTLVFYKGRAPRGEKSNWVMHEYRLHNNHSFRASKEEWVVCRVFQKSSSAAKKAQQTSSSQVSLDSPPHDDASLLHEFGDVTDLPNLNTITPTNPSTTNVNWPPPASDHRLPSLPSLPWPSGLLNPNLSVNSLLLKALQLRTCQQREIAAMTDHYMPPQGISRVMETTHHLTPNLTLEASSSSKVLHDMPQQQQEQPFNLDSIW 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00028 310 Gene3D NAC domain 14 157 IPR036093 GO:0003677|GO:0006355
Accr12g00028 310 MobiDBLite consensus disorder prediction 190 210 - -
Accr12g00028 310 Pfam No apical meristem (NAM) protein 6 131 IPR003441 GO:0003677|GO:0006355
Accr12g00028 310 SUPERFAMILY NAC domain 3 152 IPR036093 GO:0003677|GO:0006355
Accr12g00028 310 MobiDBLite consensus disorder prediction 156 213 - -
Accr12g00028 310 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 248 - -
Accr12g00028 310 MobiDBLite consensus disorder prediction 286 310 - -
Accr12g00028 310 MobiDBLite consensus disorder prediction 156 173 - -
Accr12g00028 310 FunFam NAC domain-containing protein 100-like 14 156 - -
Accr12g00028 310 ProSiteProfiles NAC domain profile. 5 152 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00028 Accr-Chr12 287886 290090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00028 1 310 NAC Transcription Factor Family AT3G18400 55.060 1.80e-106 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr12g00028 NAM 1.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00028 - - gmx:100787111 362.844