Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00025 ATGGATGTCAAAGGAAGAGGAAGCACCTCCCCCACTCTACAACAAGCCGACGCCGTCGACGACGACCTTGACCTCCGACGAGGCCCTTGGACCGTCGACGAGGACCTCACTCTCATCAATTACATCACCACTCACGGCGAAGGTCGCTGGAACTCCCTTGCTCGCTCCGCCGGCCTCAAACGTACGGGCAAGAGCTGCAGACTGAGGTGGCTCAACTATCTCCGTCCTGATGTCCGACGAGGAAATATCACACTGGAAGAACAGCTCATGATTCTTGAACTTCATTCTCGCTGGGGAAACAGGTGGTCCAAGATAGCCCAGTATTTGCCGGGAAGAACCGACAATGAGATCAAGAATTACTGGAGAACCCGCGTCCAAAAGCATGCCAGACAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGACACCATGCGCTACCTTTGGATGCCAAGGCTGGTAGAGCGCATTCAAGCGGCTGCCGCCGCCACAACGGCAAGTTCCCAGACGTTATCTGCCGCCACAACCGTCACCACGAATTCCACATACAATCATTATAATAATAACTTGCAAGTTGAGAATGGGAACATGCTGATGAACCCGGCGGCGGCCATCATGAATAATAATAATGACTTTGGAGGCTCCCAGGTCACACAGAGCTACACGCCGGAAAACAGCAGCACGGGCGCTTCATCGGACTCTTTCGGAACACAGGTCTCGCCGGTGTCGGAATTGGCCGATTATTACAGTACTACTGTCCCTAATAATAATCACGAATACTACCAACCCTCTCAGATGAGCTATTCTGATTGCATCACCAGCCCATCTGGGTTATACCCTCAAGGATTGGATTATTCCCAGGTGATGGATCCAAACAACCCCTGGATTCAGGGCGGCGACACGTTGGACAATTTGTGGAATGTTGAGAATATGATGTTTTTACAGCAGCAGCTCAATATTGACAGCATGTAA 972 0.5082 MDVKGRGSTSPTLQQADAVDDDLDLRRGPWTVDEDLTLINYITTHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHARQLKCDVNSKQFKDTMRYLWMPRLVERIQAAAAATTASSQTLSAATTVTTNSTYNHYNNNLQVENGNMLMNPAAAIMNNNNDFGGSQVTQSYTPENSSTGASSDSFGTQVSPVSELADYYSTTVPNNNHEYYQPSQMSYSDCITSPSGLYPQGLDYSQVMDPNNPWIQGGDTLDNLWNVENMMFLQQQLNIDSM 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00025 323 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Accr12g00025 323 CDD SANT 84 123 IPR001005 -
Accr12g00025 323 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Accr12g00025 323 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Accr12g00025 323 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Accr12g00025 323 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 24 209 IPR044676 GO:0003700|GO:0006355|GO:0043565
Accr12g00025 323 MobiDBLite consensus disorder prediction 214 238 - -
Accr12g00025 323 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Accr12g00025 323 Gene3D - 27 79 - -
Accr12g00025 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Accr12g00025 323 FunFam Myb transcription factor 27 79 - -
Accr12g00025 323 SMART sant 26 76 IPR001005 -
Accr12g00025 323 SMART sant 79 127 IPR001005 -
Accr12g00025 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Accr12g00025 323 FunFam MYB transcription factor 84 147 - -
Accr12g00025 323 CDD SANT 29 74 IPR001005 -
Accr12g00025 323 Gene3D - 84 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00025 Accr-Chr12 248026 249690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00025 1 314 MYB Transcription Factor Family AT3G06490 53.293 9.32e-91 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr12g00025 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00025 K09422 - gmx:100791349 436.802