Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00024 ATGGCTGACGTCTCCCAACTTCCCTGCGATTGTGACGGTGTCTGTATGATCTGCAAGGTGCTGCCGGCAGACGAGGAGAATTTGACGTGCAAAACCTGCGCTACCCAATGGCATGTTACCTGTCTCTCCACTCCTCTAGCCACCATGGCCGAAACGGTTCAGTGGGAATGCCCCGATTGCTGTACTCCGCCATCCGATTTTCCGCCGGTAACTATTGGCAAACCCGTACTTGACGGGGCTGGTGACTTGATGGCTGCGATCCGCGCCATCGAAGCTGACGCTTCTCTCTCGGATTTGGACAAGGCGAAGAAACGTCAGATGCTCATGAGTGGAATGGCTGCGCCGGAGGCAGACGAAGGTGGCGTGGAGAATATGGTAGAAGGCGGAGCGAAGGATGTCTTGGATATCCTCAGCGGGGCTTTGAACTGCTCCTTCTGCATGAAGTTGCCCGAGAGGCCCATCACGGTGACTTTGTGA 477 0.5577 MADVSQLPCDCDGVCMICKVLPADEENLTCKTCATQWHVTCLSTPLATMAETVQWECPDCCTPPSDFPPVTIGKPVLDGAGDLMAAIRAIEADASLSDLDKAKKRQMLMSGMAAPEADEGGVENMVEGGAKDVLDILSGALNCSFCMKLPERPITVTL 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00024 158 ProSitePatterns Zinc finger PHD-type signature. 9 60 IPR019786 -
Accr12g00024 158 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 4 153 IPR045134 -
Accr12g00024 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 62 IPR013083 -
Accr12g00024 158 SUPERFAMILY FYVE/PHD zinc finger 7 65 IPR011011 -
Accr12g00024 158 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Accr12g00024 158 SMART PHD_3 14 61 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00024 Accr-Chr12 224019 224495 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00024 1 156 C2H2 Transcription Factor Family AT5G39550 48.101 3.95e-34 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00024 K10638 - qsa:O6P43_017375 192.971