Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00017 ATGGCTGAAAGCAGGAAGCACATTCTACACAAACAATTAGACCTTGATGAGATACTCCCAGAAGCAGAGCACCGTTGGTTTCGACCTCCGGAAGTCTGCAAAATACTTCGCAATTATCAGAAGTTTGACTTAACACCCATTCCGCCAATTAGACCCCCAGCTGGATCACTGTTATTGTTTGATCGAAAAGTTGTTCGCTACTTTCGCAAAGATGGTCACCAATGGAAGAAAAGAAAAGATGGGAATACTGTGAGGGAATCTCATGAAAGGTTAAAGGCTGGTCCAGTGGATATTCTAAATTGTTACTATGCTCATGGAGAAGATAACGTGAACTTTCAACGACGATGTTATTGGATGCTTGATGAAAAGTTTCAGCACATTGTCCTTGTTCATTACCGAGAAGTTAAACAGGGGTACAAGGCTGCGATTTCACATTTCCCTGCAGGTCCAGTGCCTTTGGTTGGTAGCCCTTTGAGTATTTCTGCACGAGATAGTTCATCTCTTTCTTTAGTTCAAGAACCTTATGCATCAAGTGCAAATAGAGTCGATTATTATGGAGGAGCATTATCTTCTGAGTATGACAATATGGACTCTGCGAGTGGTCATCAAACCACGTTGCACACTGAACCTCTCAGTAGTCAAGGTTTTTCTCAGTTGTCAAGCAATCCATGTAATTTATGGTCATCATCTCTTCCTAGCTTTTATCCTGCATCTTTGGCACCTTCATGGCCATTAAATCAAAACTCTAGAAGAGACTCAATTAGTATACATGATACAAATCTTCATGTTGAAGGATCCGATGAAGGCTCCCTAGCTGATTTCTTTGACCATAAGCTAAGCAATGCAAGGTTTGATCCAGATAGTGCTATGCGAAATGCTATGACTAGTGGAAATAGGCTGATTAATGAAATGCACATCCAATCAGTTATAGGAGTTTCCAAGTCAGTAAATCAGGTGCAAAAAGAGGATGATTTGAATTCAGATTGTATCCAATTTAATAATCTTTTTGATCATCCAGTTCTTGAAGCTTCAACTGTTATAGTAGACAAGCAACATAACAATGGAAGTACATATAGTTGTGACTTAGAACAATTTGAATCTGGGGAGCTGAAGAAACTTGACAGTTTTGGAAGGTGGATGGCTAAGGAAATTGGTGGAAACTGTGATGACTGTTTGATGACTTCAGACTCTGGCAACTATTGGGATACACTTGATCCTCATAATTATGATAAGGTAGTGTCCAGTTTACACATGCAGTTGGATGTGGATTTATTGGGTCCTTCCCTTTCTCAAGAACAACTATTCAGCATCCTTGACTTTTCTCCAGATTGGATATTTTCTGGGTCTGAAACAAAGGTTTTAATTGTGGGCACATTCCTGGGGAGTAAGAAACTTGCTACCGAGACAAAGTGGGGATGTATGTTTGGTGAAATTGAGGTCTCTGCTAAAGTGTTGACAGACAATGTCATATATTGTCAGGCTCCTTTTCATCCACCTAGTCGAGTTCCATTCTACGTTACCTGTAGTAATAGGTTAGCTTGCAGTGAGGTGAGAGAATTTGAATATCGTGAAAACCCTATTTTAGGTGCTAGAATGATGCCAGAAGATGAGGTATGTCTTCAATTGCGATTACTTAAGTTAGTAGATCTGAAACCTAACAAAGTATGGTTCAACTGCTCTATTTCTCAATGTGAGAAATGTAAGCTTAAAGAAACAATCTACTTGACAAGAGAAGGAAGCGGCATATGTCAAGATGCTTTGAAGATCAATGTAAGTGATCATGTAAGCCATAGAGATGTCTTAGTTCAGAAACTCTTGAGAGACAAGCTTTTGCAGTGGTTAGTGGTAAAGATCCATGAAGAAGGTAAAGGGCCAAATGTGTTGGATAATGAAGGCCAAGGAGTAATACATTTGGCAGCTTCTCTTGGCTATGCATGGGCTATGGGTCCCATAGTTGATGCTGGTGTCAATCCTAATTTTAGAGATGCTTGTGGTAGAACAGGACTTCACTGGGCATCTTATTTTGGAAGAGAGGAAACTGTGATTGCACTAATCAAACTAGGTGGAGCCCCAGGTGCTGTTGAGGATCCAACATCAGCATTTCCTCAAGGACGCACTGCTGCAGATTTAGCTTCAAGTAGAGGACATAAGGGCATTGCAGCATATTTGGCTGAGGCCAATTTGACAAGCCATTTATGGACTGTCAATGAGAATGAAATAGACATCATTGCTGCAAACAAAGCAAGTGACAGTGCTTTTGAGATTGCTCTAGCTGACTCGTCTAATGTCACAATGCATGAGCAACGCTTTCTAAAAGAGTCCCTTGTAGTTTTGCAAAAATCAACTCATGCAGCAACATTAATTCAAGCTGCATTCAAAGCAAGATCATTCCGTCGGAGACAGTTAGTTAATTATACTAGTGATATACCTGAAATAGCACTAAACCTAGTTGTAGTTGGTTCCTTGAACAAGGTTCATCGAATGAGTCACCTTGAAGTTCATCTGCACTCTGCTGCTTTAAAGATCCAAAAGAGATATCGGAGGTGGAAGGGAAGGAGAGAAGTTTTGAAGATACGCAACCGTATTGTAAAAATTCAGGCCCATGTTAGAGGACAACAAGCTCGCGATAAGTACAAACAGGTTGTTTGGTCAGTTAGCATTGTGGAGAAGGCAATACTACGATGGAGGCGGAGAAGACCTGGTCTGCGAGGATTCCGAGGTGAGCAGACATTTGGAATTATGGCTTCAAGTGTTGACAAAAGTGATGAATATGAATTTCTGAGCATCGGACGGAAGCAGAAATATGATGATGTTAGTAAGGCTCTAGCTAGAGTTAAGTCCATGGTGTATCACCCTGAGGCACGTGATCAGTATATGAGGCTAGTCATGAAATTTGAGGATCTCAAGATTGGTGACGGGGAAGCAGTAAGCAGAACTTCAATCCAACAATAA 2952 0.4075 MAESRKHILHKQLDLDEILPEAEHRWFRPPEVCKILRNYQKFDLTPIPPIRPPAGSLLLFDRKVVRYFRKDGHQWKKRKDGNTVRESHERLKAGPVDILNCYYAHGEDNVNFQRRCYWMLDEKFQHIVLVHYREVKQGYKAAISHFPAGPVPLVGSPLSISARDSSSLSLVQEPYASSANRVDYYGGALSSEYDNMDSASGHQTTLHTEPLSSQGFSQLSSNPCNLWSSSLPSFYPASLAPSWPLNQNSRRDSISIHDTNLHVEGSDEGSLADFFDHKLSNARFDPDSAMRNAMTSGNRLINEMHIQSVIGVSKSVNQVQKEDDLNSDCIQFNNLFDHPVLEASTVIVDKQHNNGSTYSCDLEQFESGELKKLDSFGRWMAKEIGGNCDDCLMTSDSGNYWDTLDPHNYDKVVSSLHMQLDVDLLGPSLSQEQLFSILDFSPDWIFSGSETKVLIVGTFLGSKKLATETKWGCMFGEIEVSAKVLTDNVIYCQAPFHPPSRVPFYVTCSNRLACSEVREFEYRENPILGARMMPEDEVCLQLRLLKLVDLKPNKVWFNCSISQCEKCKLKETIYLTREGSGICQDALKINVSDHVSHRDVLVQKLLRDKLLQWLVVKIHEEGKGPNVLDNEGQGVIHLAASLGYAWAMGPIVDAGVNPNFRDACGRTGLHWASYFGREETVIALIKLGGAPGAVEDPTSAFPQGRTAADLASSRGHKGIAAYLAEANLTSHLWTVNENEIDIIAANKASDSAFEIALADSSNVTMHEQRFLKESLVVLQKSTHAATLIQAAFKARSFRRRQLVNYTSDIPEIALNLVVVGSLNKVHRMSHLEVHLHSAALKIQKRYRRWKGRREVLKIRNRIVKIQAHVRGQQARDKYKQVVWSVSIVEKAILRWRRRRPGLRGFRGEQTFGIMASSVDKSDEYEFLSIGRKQKYDDVSKALARVKSMVYHPEARDQYMRLVMKFEDLKIGDGEAVSRTSIQQ 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00017 983 ProSiteProfiles IQ motif profile. 835 864 IPR000048 GO:0005515
Accr12g00017 983 SUPERFAMILY E set domains 437 523 IPR014756 -
Accr12g00017 983 SUPERFAMILY Ankyrin repeat 616 729 IPR036770 -
Accr12g00017 983 Pfam IPT/TIG domain 437 522 IPR002909 -
Accr12g00017 983 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Accr12g00017 983 Gene3D Immunoglobulins 430 528 IPR013783 -
Accr12g00017 983 FunFam Calmodulin-binding transcription activator 2 430 526 - -
Accr12g00017 983 SMART CG_1_2 18 136 IPR005559 GO:0003677
Accr12g00017 983 SMART iq_5 780 802 IPR000048 GO:0005515
Accr12g00017 983 SMART iq_5 857 879 IPR000048 GO:0005515
Accr12g00017 983 SMART iq_5 834 856 IPR000048 GO:0005515
Accr12g00017 983 Gene3D - 596 809 IPR036770 -
Accr12g00017 983 Gene3D - 834 882 - -
Accr12g00017 983 SMART ANK_2a 664 693 IPR002110 GO:0005515
Accr12g00017 983 SMART ANK_2a 703 732 IPR002110 GO:0005515
Accr12g00017 983 ProSiteProfiles IQ motif profile. 858 886 IPR000048 GO:0005515
Accr12g00017 983 Pfam IQ calmodulin-binding motif 861 879 IPR000048 GO:0005515
Accr12g00017 983 Pfam IQ calmodulin-binding motif 836 854 IPR000048 GO:0005515
Accr12g00017 983 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Accr12g00017 983 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 965 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00017 Accr-Chr12 134542 141249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00017 59 969 CAMTA Transcription Factor Family AT2G22300 36.059 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Accr12g00017 CG-1 1.9e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00017 K21596 - gmx:100818336 1165.98