Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00004 ATGGAAGGAAGAGTTTCAGTAAAAGAATTGGTGGAAGCTGAGGAAAAGCCACCCCACACATGTCATAATAATATTACAGATGCGTCACAGAAGAATGATGATATTTTGGGTTCCACTATTCTGAGTTTGAGCCTGAATAACCAGCAAGTGCAGGCTCACAGAATTGAAGAGCAGCCGGCAGCCCAATTGGGATTGATGCGGGACAAGCTAGAGGAAATGAAGAGAGAGAATCAGAATCTAAGAGCTATGCTGTCTCAGATCACTCAACATTACGCTGCTCTTCACAATCGCCTTCTCATGGCGATGCAGCAGCGGCCGCAACAACAATCGCCTCTCAAGTCTCATAATTTGCAGGAAGACAATGAAGGAGATGAGGAGGAGGAAGCAGCGTTGCCCATCAGGCACTTCTTGGATATCCATGAGCCCTCAGCTTCAGAAAGCAACAAATCAGAAGGACTAATTCCTCACAGAAACAGCATCACGTGCACCAAACCTGCATGTGAAGCTAACAGCAATAATAATGCGAAAAACATAGAGTCAGATCAGGCAAATCCCTGCAGAAAAGTTAGAGTGTCCATAAGGACACGTTCGGATCTTTCTTTGATTGGTGACGGGTGTCAATGGAGAAAGTATGGACAAAAGATAGCCAAGGGAAACCCATGCCCCAGGGCTTACTATCGCTGCAACTTGGGAACTGCGTGTCCAGTTCGTAAGCAGGTGCAAAGGTGTGCTAAGGATAAGAGTGTTGTGATTACAAGCTATGAAGGGAAGCATAACCACGCAGTGCCTGCAGCAGCTGCGCCTGTGGCCGCTGCCACGTCAGCAGCGCTGAACATGTTCCTCTCAGGCTCAACCACAAGTGCACAAGGAAGCACACAATCAAACTCAGGCCTCTTGTCTTGTGCCTTTGCTTCCTTGTCTACAAGCTCATCATGTCCAACCATAACGCTGGACTTGACCCAACCCTCCAATCAACACATGCAATTCCAAATGTCTGCCTCATCAAGCCACTCCTCCCACCCATTTCCCTTTGCCCTGGATGGTTATGATTCATCCTTGTCTGCCAAGAACATGTCCTTGGTAGATGTCATCAGTGCGGCTTTAGTTAAAGATCCTTCGTTCAAGGCCGCTTTAGCTGCCTCCATTTCTTCATTTTCTGGAGCCACTTCATTACAGCGTTAA 1182 0.4738 MEGRVSVKELVEAEEKPPHTCHNNITDASQKNDDILGSTILSLSLNNQQVQAHRIEEQPAAQLGLMRDKLEEMKRENQNLRAMLSQITQHYAALHNRLLMAMQQRPQQQSPLKSHNLQEDNEGDEEEEAALPIRHFLDIHEPSASESNKSEGLIPHRNSITCTKPACEANSNNNAKNIESDQANPCRKVRVSIRTRSDLSLIGDGCQWRKYGQKIAKGNPCPRAYYRCNLGTACPVRKQVQRCAKDKSVVITSYEGKHNHAVPAAAAPVAAATSAALNMFLSGSTTSAQGSTQSNSGLLSCAFASLSTSSSCPTITLDLTQPSNQHMQFQMSASSSHSSHPFPFALDGYDSSLSAKNMSLVDVISAALVKDPSFKAALAASISSFSGATSLQR 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00004 393 Gene3D WRKY domain 186 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Accr12g00004 393 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 56 387 IPR044810 GO:0003700
Accr12g00004 393 SUPERFAMILY WRKY DNA-binding domain 194 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Accr12g00004 393 MobiDBLite consensus disorder prediction 103 128 - -
Accr12g00004 393 Pfam WRKY DNA -binding domain 204 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Accr12g00004 393 Coils Coil 63 90 - -
Accr12g00004 393 ProSiteProfiles WRKY domain profile. 197 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Accr12g00004 393 SMART WRKY_cls 202 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00004 Accr-Chr12 24153 26378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00004 66 321 WRKY Transcription Factor Family AT4G04450 38.816 2.57e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Accr12g00004 WRKY 1.4e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00004 - - pcin:129319814 546.199