Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g01437 ATGAATGAGGGAAAGCGTAAATCTAGGAAGGAAGATTATGAAGGGAAGGAAGAGGATTCCAAGAGGAGCCGCCGTGAACGAGATCGAGAGAAGACTAGTGATAAAAGTAAGGGTAGAAGTGAAAGGAGACATAGGGATAGAGAAAAGCAGGATCGTGAGAGTCGACGCCATGAGAGAGAGAAAAGCTATGATTTTGACGAAAAACTTGATAGAGAAAGAGAGAAGCATAGAGATAAGGATAGGACACGAGTTCATGATGAAGAAAGAGAAAGAGCTCGAGATAAGAAAAGGGAAAGAGATAGGGAAGATAGGGAAAGGGAGAGGAGAGATAGAAAGGAGAAAGAAAGGGAGAAGGAGAGGGAAAGGGAACGTGATAGGAGAGAGCATGAAAGGGAGAGGGAAGTAGAAAGAGAGAGGGGGAGGAGACTAAGAGAGGGAGAGAAGCGTAGGGATATTGATAGTGAGTATAGTGATGGTGATTCCAGGGATAGAGAAAGAAAGCGGCACAAGAGAGATGATGATGATTACAAGGGTAGAGAGCAGGAGAAGAGTGTTGGCAAGTCAAGCAGGAAAACTGAGAATATTGAGGAGAGTCCAAGGAAAAAGAGTGGCGATGGTAACTCAGATGCCAATGAAGGCAAACCAAGCCGTGAGGAGGAGTTAGAGGATGAACATCAGAAGCTGGATGAAGAGATGGAAAAGAGGAGAAGAAGAGTTCAGGAATGGCAAGAGCTGAGAAGGAAGAGGGAAGAAGCTGAGAGAGAAAAGCAGGGTGAAGCAAGTGCTGATGAACCAAAGTTTGGAAAGGCCTGGACACTTGAAGGGGAATCTGATGATGAAGAAGGAACCACTACAGTGAAGCCACATACAGCTATGGATGTGGATGAAGATGACAAAACTTTGGATAAAGAACATAACGATTTGATGGCAGTAGATACTAGTGATGGACCTGTTACATCTAATTTACCGGATGAAGCGGATGGGTCTCATGCAGATGAGGAAATTGATCCATTAGATGCTTTCATGAGTAATATGGTTTTGCCTGAAGTTGGAAAGCTGAATAGTGCTGTGGCTCCTGAATCTTCTAATCAAACTGCTGACTTAAAGCCCAAAGATAATGATGACCAGCAAAGTAATGGTAGGAACCCTAAGAGAGGTTCAAAATCAATTGGGAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTATGAAGACCTTGAAATTGAGGGTGATCCATTAGATGAAGATGATGATGAATTCGTGAAAAGAGTAAAGAAGACTAAAGCTGAGAGACTTTCTATTGTTGACCATTCAAAGATTGATTATAAGCCATTCAAGAAAAATTTTTATATTGAAGTAAAGGAGATTGCCAAGCTAACTCCAGAAGAAGTTGCAGCATACAGGAAGGAATTGGAGTTAAAGATACATGGCAAGGATGTGCCAAAGCCTGTAAAATCATGGAATCAGATAGGACTTACTAGCAAAATTTTGGAGACAATAAAGAAGCTTAACTATGCAAAGCCATTGCCTATTCAAGCTCAGGCCCTCCCTGTAATTATGAGTGGTAGAGATTGCATCGGAATTGCTAAAACTGGGTCAGGAAAAACCCTTGCTTTTGTTCTGCCAATGTTGAGGCACATCAAGGATCAACCGCCAGTTGTTTCAGGAGATGGACCGATTGGACTCATAATGGCCCCTACAAGGGAGCTTGTTCAACAGATTCACAGTGATATAAAGAAATTTACAAAAGTACTTGGTCTAAGGTGTGTGCCTGTCTATGGAGGTTCTGGTGTTGCCCAGCAGATCAGTGAATTGAAACGTGGTACTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATATTATGCACCAGCGGTGGAAAGATAACTAACCTGCGTAGAGTCACTTATCTGGTCATGGATGAGGCTGATCGTATGTTTGACATGGGCTTTGAACCTCAAATCACTCGAATTGTTCAGAATATTCGACCAGATCGTCAAACTGTTCTCTTTTCTGCTACTTTTCCTCGTCAAGTGGAAATTCTGGCTCGTAAGGTTTTGAACAAGCCTGTTGAAATACAAGTTGGTGGAAGGAGTGTTGTTAACAAGGACATAACACAGCTAGTAGAGGTGAGGCCAGAAAATGAGAGGTTCTTAAGGCTCTTGGAATTACTTGGGGAATGGTATGAGAAGGGAAAAATTTTGGTATTTGTCCACTCGCAGGAGAAATGTGATGCTTTGTTCAAGGATTTGCTTAGACATGGTTATCCATGCCTTTCTCTTCATGGGGCTAAGGATCAGACAGATCGGGAATCCACAATTTCTGACTTCAAAAATAATGTCTGCAATTTGTTGATTGCAACTAGCATTGCTGCTAGGGGTTTAGACGTCAAGGAGCTTGAATTGGTTATCAATTTTGATGTTCCAAACCACTATGAAGATTATGTACATCGTGTTGGACGTACTGGCCGAGCTGGTCGCAAGGGTTGTGCTATCACATTTATTTCGGAGGAAGAAGCAAGATATGCGCCAGATTTGGTTAAAGCTTTGGAGCTATCTGAACAAATAGTTCCTCATGACCTGAAAGCTCTTGCTGATGGATTTATGGCAAAAGTTAATCAAGGACTTGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGTTTTAAATTTAATGAAGAAGAAGATGAGGTGAGGAGAGCTGCAAAGAAAGCACAAGCCAAAGAATATGGTTTTGAAGAAGATAAGTCTGATTCTGAGGATGAAGAGGAAGGTATTAGGAAGGCAGCAGGTGACATCTCACAGCATCCTGCTCTTGCACAGATTCTAGCTGCTGCCACCAAAGCAAACACTCCTGCAATGCCCTCTAGTTCCCAGGTAATTTCAAATGGTGGGCCTGCTTCTTTGCCTGCTGTTCTTGGTCTCCAGACTGCAGGAATCATGCCCGGGACGGGGCTGGCCATTGTTCCAAGTGATGGAGCAACTCGGGCAGCATTAGCTGCTATGAACCTGCAAAATAAATTAGCAAAGATTGCTGGTGCAATGCCTGACCATTATGAGGCTGAGTTGGAGATAAATGATTTCCCGCAAAATGCTCGGTGGAAAGTCACACACAAGGAAACTCTAGGCCCTATTTCTGAGTGGACTGGAGCTGCTATTACAACCAGGGGGCAGTATTTCCCACCTGGTAGGGTCCCAGGGCCTAATGAACGGAAACTCTACTTGTTCATTGAGAGCCCCAGTGAACAGTCTGTCAAGAAAGCAAAGGCAGAATTGAAGCGTGTGCTGGAGGACATCACAAATCAGGCTTTGCAACTTCCTGGTGGCGCTCAACCAGGCAAATACTCTGTTGTATAA 3360 0.4345 MNEGKRKSRKEDYEGKEEDSKRSRRERDREKTSDKSKGRSERRHRDREKQDRESRRHEREKSYDFDEKLDREREKHRDKDRTRVHDEERERARDKKRERDREDRERERRDRKEKEREKERERERDRREHEREREVERERGRRLREGEKRRDIDSEYSDGDSRDRERKRHKRDDDDYKGREQEKSVGKSSRKTENIEESPRKKSGDGNSDANEGKPSREEELEDEHQKLDEEMEKRRRRVQEWQELRRKREEAEREKQGEASADEPKFGKAWTLEGESDDEEGTTTVKPHTAMDVDEDDKTLDKEHNDLMAVDTSDGPVTSNLPDEADGSHADEEIDPLDAFMSNMVLPEVGKLNSAVAPESSNQTADLKPKDNDDQQSNGRNPKRGSKSIGRIIPGEESDSDYEDLEIEGDPLDEDDDEFVKRVKKTKAERLSIVDHSKIDYKPFKKNFYIEVKEIAKLTPEEVAAYRKELELKIHGKDVPKPVKSWNQIGLTSKILETIKKLNYAKPLPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVSGDGPIGLIMAPTRELVQQIHSDIKKFTKVLGLRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPENERFLRLLELLGEWYEKGKILVFVHSQEKCDALFKDLLRHGYPCLSLHGAKDQTDRESTISDFKNNVCNLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLVKALELSEQIVPHDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEEEGIRKAAGDISQHPALAQILAAATKANTPAMPSSSQVISNGGPASLPAVLGLQTAGIMPGTGLAIVPSDGATRAALAAMNLQNKLAKIAGAMPDHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGRVPGPNERKLYLFIESPSEQSVKKAKAELKRVLEDITNQALQLPGGAQPGKYSVV 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g01437 1119 Pfam DEAD/DEAH box helicase 510 681 IPR011545 GO:0003676|GO:0005524
Accr11g01437 1119 MobiDBLite consensus disorder prediction 1 310 - -
Accr11g01437 1119 CDD KH-I_AtRH42_like 1016 1118 - -
Accr11g01437 1119 SMART helicmild6 746 827 IPR001650 -
Accr11g01437 1119 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 843 IPR027417 -
Accr11g01437 1119 PANTHER RNA HELICASE 428 907 - -
Accr11g01437 1119 MobiDBLite consensus disorder prediction 901 915 - -
Accr11g01437 1119 Coils Coil 218 262 - -
Accr11g01437 1119 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 640 648 IPR000629 -
Accr11g01437 1119 Pfam Helicase conserved C-terminal domain 719 827 IPR001650 -
Accr11g01437 1119 MobiDBLite consensus disorder prediction 901 928 - -
Accr11g01437 1119 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 866 IPR027417 -
Accr11g01437 1119 MobiDBLite consensus disorder prediction 400 415 - -
Accr11g01437 1119 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 516 694 IPR014001 -
Accr11g01437 1119 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 705 866 IPR001650 -
Accr11g01437 1119 CDD SF2_C_DEAD 706 836 - -
Accr11g01437 1119 Coils Coil 85 132 - -
Accr11g01437 1119 MobiDBLite consensus disorder prediction 367 381 - -
Accr11g01437 1119 SMART ultradead3 504 709 IPR014001 -
Accr11g01437 1119 Coils Coil 1083 1106 - -
Accr11g01437 1119 Gene3D - 695 869 IPR027417 -
Accr11g01437 1119 CDD DEADc_DDX46 474 695 - -
Accr11g01437 1119 FunFam probable ATP-dependent RNA helicase DDX17 447 697 - -
Accr11g01437 1119 MobiDBLite consensus disorder prediction 1 415 - -
Accr11g01437 1119 Gene3D - 437 694 IPR027417 -
Accr11g01437 1119 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 485 513 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g01437 Accr-Chr11 37459870 37463229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g01437 472 847 Eukaryotic Initiation Factors Gene Family AT3G19760 31.316 2.73e-56 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g01437 K12811 - gmx:100784306 1519.98