Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g01406 ATGGCCTATGGGCACTACGTATCCCAGGAATGGAAACCCAGCCCTGGGGAGGATGAAAACTCGGCCGGTGGTTGTTTCAGTTGCAACATCTGCTTAGACTTTGCTCATGAACCGGTAGTCACTCACTGTGGCCACCTTTACTGCTGGCCCTGCATCTACAAGTGGCTTCATCTCCAAACTTCTTCCTTAACATCTGATGAGCACCCTCAATGCCCCGTTTGCAAGGCTTGTATATCCTCTACCACAATCATCCCGCTCTACGGCCGAGGACAGGCCTCACTGGCTCAAAGTGAGCACCACAATGAGAAGTCATCAGATCCAGATATTTTTATACCGCCAAGACCACCTGCTGCAAGTGTTGAAGCTCCATTAGCATTATCATCATCTAATCCTCCTCATAACCCTAATCAGAATCCACATTTTGTTGCTTCTTCTCTAGACCATGAGAATGCTTCATCACCACAACAGATGGTTAATCTTGGTGCTAACCTGATGCCGGGTTTTCATCATCCTCTGCATGGGATGTTTGGGGAGATGGTGTATGCTAGAGTGTTTGGCAATCCGGGAAATATATACGCATTTCGGAATTCTTATCACATGGTAGGAGCTAACAGCCCTAGATTGAGAAGGCAGGAGATGCAGGCAGACAAATCATTGAAGAGAGTATCAATTTTCCTGTGTTGCTGCCTTGTTTTGTGTCTTCTTGTGTTTTGA 714 0.4664 MAYGHYVSQEWKPSPGEDENSAGGCFSCNICLDFAHEPVVTHCGHLYCWPCIYKWLHLQTSSLTSDEHPQCPVCKACISSTTIIPLYGRGQASLAQSEHHNEKSSDPDIFIPPRPPAASVEAPLALSSSNPPHNPNQNPHFVASSLDHENASSPQQMVNLGANLMPGFHHPLHGMFGEMVYARVFGNPGNIYAFRNSYHMVGANSPRLRRQEMQADKSLKRVSIFLCCCLVLCLLVF 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g01406 237 MobiDBLite consensus disorder prediction 124 144 - -
Accr11g01406 237 Pfam Zinc finger, C3HC4 type (RING finger) 28 74 IPR018957 GO:0046872
Accr11g01406 237 SUPERFAMILY RING/U-box 23 87 - -
Accr11g01406 237 ProSiteProfiles Zinc finger RING-type profile. 28 75 IPR001841 -
Accr11g01406 237 ProSitePatterns Zinc finger RING-type signature. 43 52 IPR017907 -
Accr11g01406 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 234 IPR045103 GO:0005783|GO:0006511|GO:0061630
Accr11g01406 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 112 IPR013083 -
Accr11g01406 237 SMART ring_2 28 74 IPR001841 -
Accr11g01406 237 MobiDBLite consensus disorder prediction 94 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g01406 Accr-Chr11 36019894 36020607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g01406 14 223 C3H Transcription Factor Family AT4G27470 40.826 2.13e-47 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g01406 K10666 - gmx:100816864 271.166