Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr11g01375 | ATGGCTCCTTCTCCTTCTCCTTCTCCTTCTTCTTCCATGTCGTCGTCTTCACCAGTCATGGCTTTTGCAGTTGCTTTTGCTCTTTGTGTGTTCTTCAGCTGCCTGGTTTCTGTATCACAAGCTCAAAACGCTACAACAGATCCTTCTGAAGCGAGAGTTTTGAATTCAATTTTCAACAAATGGGGAAAATCGGCTCCAGAAAATATATGGAATATAAGCGGGGAACCATGTAGCGGACGAGCCATTGACAGCACTACCAAGGCCGAGGACTTTAATCCATTTATACAATGCGATTGTTCCAACGGCACTTGCCACATTACCGCACTGAGGGTTTATGCATTGGATGTTGTTGGGGAAATCCCAGAAGAGCTATGGACTCTGACTCACCTTACCAATTTGAACCTCGGCCAGAATTACTTGACGGGTTCTCTACCTCCAGCAATAGGAAATCTAACTCGTATGCAATACTTGACCTTAGGCATCAATTCCTTCTCAGGGGAGCTTCCCATGGAATTGGGAAATCTTACCGAGTTAAAAGTATTGGGTCTTGGATCCAACGGATTTTCTGGTTCTCTCCCGTCTGAATTAGGGAAACTCGTGAAATTGGAACAACTCTACTTAGATAGTTCGGGACTTAGTGGCCAGATTCCTCCCACTTTTGCTAATCTTAAAAACCTGGCGTCAGTATGGGCTTCAGACATGGAACTCACGGGCAGGATACCTGACTTCATAGGAAATTGGTCAAAGCTTAAGGAGTTGAGGTTTCAGGGTAATTCCTTTGAAGGCCCAATACCATCATCATTGAGCAATCTGACTTCTCTTTCAGATTTGAGAATAAGTGAAATATCCAATGCGAGCTCCTCACTGGCATTTATAAGGAACATGAAGTCTTTGACTGTCTTAGTACTAAGAAATAACAATATTTCTGATTCAATTCCATCCAATATTGGTGAATTTCTAAATTTGACCCAGCTGGATCTGAGCTTCAATAACATCACAGGACAGATTCCGGGATCTCTTTTCAATTTGAGTTCCCTTGCATACTTGTTTCTTGGAAATAACAAACTCAGTGGTACAATCCCTACTCAGAGAAGCCCAACTCTTCTCACTATAGATTTGTCCTATAACAATCTATCAGGGAGCCTCCCCTCTTGGGTAAACCAACAAAATTTACAACTAAATTTGGTTGCCAACAACCTGACAATAGATGGTTCAAATAGCAGTGGCCTTCCTTCTGGACTCGATTGTTTGCAGCAAAATTTTCCTTGTTTTCGTGGTGCTGGAATATATTATAACTTTGCAATCAAGTGTGGCGGTCCTCCAATTAAAACTGCAGAAAGAATTACTTATGACACAGATAATGAGACACTTGGTCCTGCAACTTATTTTGTTACTGATACAAGAAGATGGGCAGTTAGCAATGTTGGGTTATTTACTGGGTCAAAAGATCCTCTATACGAAAGTTTTGTATCCAATCAATTCACTGGTACTGTGGACTCAGAGCTCTTCCAGACAGCACGGCTATCGGCATCTTCGTTAAGATATTATGGCCTGGGGCTGGAAAATGGGAATTATAACATTTCCCTCTTTTTCGCAGAAACATCTATTCTAGATACTACTACTACGTGGAAAAGTCTTGGCAGACGGGTCTTTGATATATATATCCAGGGGAATCGTGTTTGGAAGGATTTTGACATAAAAAGGGAAGCTGGGGGTGCCTCTTTTAGAGCTGTAAGAAGGGATTTTCGGGTTACTGTGTCAGAAAACTTTCTTGAGATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGTATTCCAGCTCAAGGTACTTATGGTCCTCTGATTTCAGCAATCAGCACTACCCCAGATTTCATTCCCAGAGTCAGTAACAAACTTCCAGGCAGTTCAAAGAACAGAACCGGTCTGATTGTGGGAGTTGTTGTTGGTGTTGGAGTTGTAAGCTTTCTGTCTTTTCTTTTGGTTTTCTGTATCGTCCAGAGAAGAAAGCGTCATGGAGATGGTGAAGAAGAGCTTTTAGGTATTGATACAAAGACATACACTTTCAGCTATTCTGAGTTAAAGAATGCTACAAGTGACTTCAATCCTGACAACAAACTGGGGGAGGGAGGTTTCGGACCTGTTTATAAGGGAACACTTAATGATGGAAGAGTAGTTGCTGTGAAACAATTATCTGTAGCATCTCATCAAGGAAAGAGCCAGTTCATAGCTGAGATTGCAACAATATCTGCTGTGCAACATCGCAATCTTGTTAAATTATATGGGTGTTGCCTTGAAGGAAATAAAAGACTTCTTGTCTATGAGTATCTAGAAAACAAGAGTCTTGATCAAGCATTATTTGAAAATTGTTTAGCTCTCAACTGGCCCACACGCTATGATATCTGCATGGGTGTGGCTAAAGGTTTAGCTTATCTTCATGAAGAGTCTCGGCTCCGTATTGTGCACCGTGATGTAAAGGCTAGTAATGTTCTGCTTGATCATGAGCTTACCCCTAAAATATCAGATTTTGGTTTGGCCAAGTTATATGATGATAAAAAGACCCATATAAGTACCCGTGTGGCTGGGACAATTGGATACCTTGCTCCGGAGTATGCCATGCGTGGGCACCTTACAGAGAAAGCAGATGTATTTTCCTTTGGCGTTTTGGCCTTAGAGATAGTTAGTGGGAGGCCAAATTCTGATTCAAGCCTGGAAGGAGAGAAGATGTATCTTCTAGAATGGGCTTGGCAACTGCATGAAAACGACTCTATACTTGAACTGGTAGATCCTAGACTATCAAAAGGTTTCAACGAGGAAGAAGTAAAAAGGATTGTAGGGATATCTCTTCTGTGCACTCAATCATCACCATCGTTAAGGCCAGCGATGTCCCGTGTGGTGGCGATGCTTTCTGGAGATATCGAAGTGAGCAGTGTAACTTCAAAGCCTGGATACTTGACAGACTGGAAATTTGATGATGTGAGCAGCTTCATGACTGGTTTGGCGACAAGGGGATCAGAGTCAAGTCAATATAACTCATCCACAAGTACCAGCACTGTTAGTGTTGCAAACCATTCACCTGGAGGTGCTTCTAAACCAATCCTTCGTCATATTATTAGTCAAGGTAGGTGA | 3126 | 0.4207 | MAPSPSPSPSSSMSSSSPVMAFAVAFALCVFFSCLVSVSQAQNATTDPSEARVLNSIFNKWGKSAPENIWNISGEPCSGRAIDSTTKAEDFNPFIQCDCSNGTCHITALRVYALDVVGEIPEELWTLTHLTNLNLGQNYLTGSLPPAIGNLTRMQYLTLGINSFSGELPMELGNLTELKVLGLGSNGFSGSLPSELGKLVKLEQLYLDSSGLSGQIPPTFANLKNLASVWASDMELTGRIPDFIGNWSKLKELRFQGNSFEGPIPSSLSNLTSLSDLRISEISNASSSLAFIRNMKSLTVLVLRNNNISDSIPSNIGEFLNLTQLDLSFNNITGQIPGSLFNLSSLAYLFLGNNKLSGTIPTQRSPTLLTIDLSYNNLSGSLPSWVNQQNLQLNLVANNLTIDGSNSSGLPSGLDCLQQNFPCFRGAGIYYNFAIKCGGPPIKTAERITYDTDNETLGPATYFVTDTRRWAVSNVGLFTGSKDPLYESFVSNQFTGTVDSELFQTARLSASSLRYYGLGLENGNYNISLFFAETSILDTTTTWKSLGRRVFDIYIQGNRVWKDFDIKREAGGASFRAVRRDFRVTVSENFLEIHLFWAGKGTCCIPAQGTYGPLISAISTTPDFIPRVSNKLPGSSKNRTGLIVGVVVGVGVVSFLSFLLVFCIVQRRKRHGDGEEELLGIDTKTYTFSYSELKNATSDFNPDNKLGEGGFGPVYKGTLNDGRVVAVKQLSVASHQGKSQFIAEIATISAVQHRNLVKLYGCCLEGNKRLLVYEYLENKSLDQALFENCLALNWPTRYDICMGVAKGLAYLHEESRLRIVHRDVKASNVLLDHELTPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVLALEIVSGRPNSDSSLEGEKMYLLEWAWQLHENDSILELVDPRLSKGFNEEEVKRIVGISLLCTQSSPSLRPAMSRVVAMLSGDIEVSSVTSKPGYLTDWKFDDVSSFMTGLATRGSESSQYNSSTSTSTVSVANHSPGGASKPILRHIISQGR | 1041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr11g01375 | 1041 | Pfam | Protein tyrosine and serine/threonine kinase | 703 | 968 | IPR001245 | GO:0004672|GO:0006468 | |
| Accr11g01375 | 1041 | FunFam | Os05g0263100 protein | 51 | 284 | - | - | |
| Accr11g01375 | 1041 | Pfam | Leucine rich repeat | 297 | 356 | IPR001611 | GO:0005515 | |
| Accr11g01375 | 1041 | FunFam | Leucine-rich repeat receptor-like protein kinase | 670 | 775 | - | - | |
| Accr11g01375 | 1041 | Gene3D | Ribonuclease Inhibitor | 286 | 408 | IPR032675 | - | |
| Accr11g01375 | 1041 | MobiDBLite | consensus disorder prediction | 1002 | 1024 | - | - | |
| Accr11g01375 | 1041 | ProSiteProfiles | Protein kinase domain profile. | 700 | 974 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Accr11g01375 | 1041 | FunFam | Leucine-rich repeat receptor-like protein kinase | 430 | 622 | - | - | |
| Accr11g01375 | 1041 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 285 | 408 | - | - | |
| Accr11g01375 | 1041 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 776 | 980 | - | - | |
| Accr11g01375 | 1041 | SUPERFAMILY | Protein kinase-like (PK-like) | 683 | 989 | IPR011009 | - | |
| Accr11g01375 | 1041 | Gene3D | Ribonuclease Inhibitor | 47 | 285 | IPR032675 | - | |
| Accr11g01375 | 1041 | SMART | LRR_typ_2 | 321 | 343 | IPR003591 | - | |
| Accr11g01375 | 1041 | SMART | LRR_typ_2 | 127 | 151 | IPR003591 | - | |
| Accr11g01375 | 1041 | SMART | LRR_typ_2 | 175 | 199 | IPR003591 | - | |
| Accr11g01375 | 1041 | SMART | LRR_typ_2 | 295 | 319 | IPR003591 | - | |
| Accr11g01375 | 1041 | SMART | serkin_6 | 700 | 957 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Accr11g01375 | 1041 | Pfam | Malectin domain | 432 | 618 | IPR021720 | - | |
| Accr11g01375 | 1041 | ProSiteProfiles | Leucine-rich repeat profile. | 321 | 343 | IPR001611 | GO:0005515 | |
| Accr11g01375 | 1041 | MobiDBLite | consensus disorder prediction | 1002 | 1032 | - | - | |
| Accr11g01375 | 1041 | CDD | STKc_IRAK | 706 | 968 | - | - | |
| Accr11g01375 | 1041 | Gene3D | Transferase(Phosphotransferase) domain 1 | 776 | 980 | - | - | |
| Accr11g01375 | 1041 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED | 30 | 1002 | - | - | |
| Accr11g01375 | 1041 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 819 | 831 | IPR008271 | GO:0004672|GO:0006468 | |
| Accr11g01375 | 1041 | Gene3D | Phosphorylase Kinase; domain 1 | 663 | 775 | - | - | |
| Accr11g01375 | 1041 | Gene3D | - | 431 | 622 | - | - | |
| Accr11g01375 | 1041 | SUPERFAMILY | L domain-like | 95 | 402 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr11g01375 | Accr-Chr11 | 34479740 | 34492560 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr11g01375 | 111 | 284 | Receptor kinase-like Gene Family | AT1G56120 | 29.714 | 1.30e-11 | 67.0 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_DLSV | Accr11g01375 | PK_Tyr_Ser-Thr | 1.3e-48 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr11g01375 | - | - | lang:109352863 | 1497.64 |