LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr11g01284	ATGGACCAACGGAACACAATGGTTCTTCTTCTTCTGCTGCTTCTGTTCCAAGTTCTGTTCATAGCAGCACAGAACTCCAACCAAGACTTTACAGCTTTATCATCTCTCACTGAGTTTTGGGAAAACAAGCCACCAAATTGGGTGGGTACAGATCCTTGTGGCGGTAGTTGGGATGGCATTGGATGTACCAAATCAAGAGTGACCGCAATACAATTGTCAAGCATGAATTTAAAAGGCAGCTTGACAGACGATATTGGGAGATTAACTGAATTAAGAACTCTGGACCTCTCTTTCAACAAAGGCATGAGTGGAAGAATTCCAGCTGAAATTGGGAATTTGAGAAATTTACAAACCCTGTCATTGGTTGGTTGTGATTTCTTTGGTCCTATTCCTGATTCATTAGGAGCTCTTAATCAGCTGACCTTTTTAGCTCTTAATCTTAATCGGTTGAGTGGGCCTATTCCACGTACGTTTGGCAATCTATCCAATGTTGATTGGCTAGATATTTCAGAGAACCAGATTGAAGGACCTATCCCTATCTCTGATGAACAAGGACCTGGTCTTGACATGCTACTCAAAACCGAGCACTTTCATTTTGGAGGCAATCTCCTCTCAGGGCAAGTTCAACCGAAGCTTTTCAGCTCAAATATGATACTAAAACACTTGCTTCTTGACAACAATAACTTAAGTGGCAGCATTCCAGACACTATTGGATTAGTGAAGACATTGACAGCGATACGCTATGACCACAATAATATGACTGGAGAAGTACCTTCAAGTATCAGAAATCTTACAAAGCTCACTGATCTGAATTTAGGCAACAATAACCTAAATGGCTCTATGCCTGATCTTACTGAATTAAATTCACTCGCTACTGTGGATTTGAGCAACAACTCTTTTAATTCTTCCAGTATCCCTTCTTGGGCTTCAAGTTTGCCTTATCTAACTACATTAACGTTGGAAAACACTGGACTGCAAGGGAAAATACCTACCTCCTTATTTAGCCAGCCTAATATAGAGACTGTGATACTGAGGAATAATCAGCTCAATGGTACCTTGGATGTTAGCAACTACACACCCAATTTGGCTCTTGTAGATTTGGGGGCTAATAAGATAACTGACTTTGTTCAAAAAAGTCAAAAAATCACTTTGAATATCACACTAGTTGGCAACCCCATTTGTCTAGAAACTGGAGCTGGTTCACAAAGTTACTGCATAAACTCACAAAATAGTATCACATATTCAACAGTTCCAAATAACTGTATACCTCCTCCTTGTAGTTCAGACATGGTTTCCAGCCCAAACTGCAAATGTGCATTTCCTTATACAGGAGTTTTGACTTCTAGAGTTCTCGGTTTCTCAAACTTTGGAAACATAAGTTATTTTAAGGATCTTGAGCATGGCTTGTTGGCCACTTTCCAGTCCCATGGCCTGCCAGTGGATTCAGTTTCTCTCAACAACCCCTTCTGGAACTCTTCTTCTGGTTATTTTAGATTGGACCTAAAAGTCTTCCCATCTCAAAGTGACCGTTTCAACAGAACCGGAGTTGTAAGCATTTCATTTGTCCTCTCCAATCAGATCTATGAAGCTCCAGAATTTTTCAACCCATACTATTTTTCTAGTAGCAGTAGCTATGATTTCTCCGCAGAAGCGTCTTCTTCAAGTAAAATAAATAAGGGGATTATAGCCGGTGCAGTAGCTGCTGGTGTTGTCATTTTGGTACTGTCCATCTTTGTAATATTTGTAATCCGCCAGAAGAAAATAACAAAGGCATTTGATCCTTTTGCAAACTGGGAACAGAACAATAGTAGTGGCAGTGCTCCTCATATAAAAGGAGCGCGTTGGTTTTCTTTTGAAGAGCTCAAGAAATACACCAACAACTTTCCTGACGCCAATGCTATTGGAGTCGGGGGCTATGGAAAGGTTTACCAAGCTGTTCTTCCCTCTGGGGAACTGGTCGCCATCAAGCGTGCTTCTCAAGAATCTATGCAGGGTGCTGTTGAGTTCAAAACTGAGATTGAGCTTCTATCAAGGGTTCATCACAAGAATCTTGTTGGTCTTGTGGGATTTTGTTATGATAAAGGTGAACAAATGCTGGTATATGAGTATGTTCCTAATGGCACTATAATGGACAGCCTTTCAGGAAAATCTGGAATTAGAATGAATTGGATAAGGAGGCTAAAAGTAGCTGTGGGAGCAGCCAGAGGGCTAGCCTATCTTCATGAACTAGCTGATCCACCAATCATACACAGGGACATAAAATCAAGTAATATTCTGCTCGATGACCACCTAAATGCAAAAGTTGCTGATTTTGGTCTCTCCAAGCTTAAGGATAGTGACAGGGGCCATATCACAACTCAAGTCAAAGGCACATTGGGGTATATGGATCCTGAATACTACATGACCCAGCAGTTAACAGAAAAGAGCGATGTATACAGCTTTGGAGTTACAATGCTTGAGCTGGTAACAGCAAGGAAGCCAATAGAGCAAGGAAAGTTCATTGTAAGAGAGGTTCTAGGAATAATGGATAGATCAAAAGAGTTGTACAATCTTCATGCCCTTATAGATCCAATGATAAAGCAAGAAGGAAACCCAAAAGGCTTAGAGAAATTTGTAGACCTAGCATTGAAGTGTGTCAATGATCATGCGGAAGACAGGCCAACAATGGCTGATGTTGTGAAAGAGATTGAGAATATACTGCAACTTGCCGGTTTCAACCCCAATGCTGAATCAACATCAACATCAGAAGCTTATGAAAATGCCAGTGGTGGAAAGATTTTCCATCTTGATATCGATAAAGATTTCTCCTACACGAGCGTTTTTCCACCGGTAAAGGTGGAACCTCAGTAA	2850	0.4081	MDQRNTMVLLLLLLLFQVLFIAAQNSNQDFTALSSLTEFWENKPPNWVGTDPCGGSWDGIGCTKSRVTAIQLSSMNLKGSLTDDIGRLTELRTLDLSFNKGMSGRIPAEIGNLRNLQTLSLVGCDFFGPIPDSLGALNQLTFLALNLNRLSGPIPRTFGNLSNVDWLDISENQIEGPIPISDEQGPGLDMLLKTEHFHFGGNLLSGQVQPKLFSSNMILKHLLLDNNNLSGSIPDTIGLVKTLTAIRYDHNNMTGEVPSSIRNLTKLTDLNLGNNNLNGSMPDLTELNSLATVDLSNNSFNSSSIPSWASSLPYLTTLTLENTGLQGKIPTSLFSQPNIETVILRNNQLNGTLDVSNYTPNLALVDLGANKITDFVQKSQKITLNITLVGNPICLETGAGSQSYCINSQNSITYSTVPNNCIPPPCSSDMVSSPNCKCAFPYTGVLTSRVLGFSNFGNISYFKDLEHGLLATFQSHGLPVDSVSLNNPFWNSSSGYFRLDLKVFPSQSDRFNRTGVVSISFVLSNQIYEAPEFFNPYYFSSSSSYDFSAEASSSSKINKGIIAGAVAAGVVILVLSIFVIFVIRQKKITKAFDPFANWEQNNSSGSAPHIKGARWFSFEELKKYTNNFPDANAIGVGGYGKVYQAVLPSGELVAIKRASQESMQGAVEFKTEIELLSRVHHKNLVGLVGFCYDKGEQMLVYEYVPNGTIMDSLSGKSGIRMNWIRRLKVAVGAARGLAYLHELADPPIIHRDIKSSNILLDDHLNAKVADFGLSKLKDSDRGHITTQVKGTLGYMDPEYYMTQQLTEKSDVYSFGVTMLELVTARKPIEQGKFIVREVLGIMDRSKELYNLHALIDPMIKQEGNPKGLEKFVDLALKCVNDHAEDRPTMADVVKEIENILQLAGFNPNAESTSTSEAYENASGGKIFHLDIDKDFSYTSVFPPVKVEPQ	949

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr11g01284	949	CDD	STKc_IRAK	634	899	-	-
	Accr11g01284	949	ProSiteProfiles	Leucine-rich repeat profile.	266	288	IPR001611	GO:0005515
	Accr11g01284	949	ProSitePatterns	Protein kinases ATP-binding region signature.	634	656	IPR017441	GO:0005524
	Accr11g01284	949	SMART	serkin_6	628	900	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr11g01284	949	Gene3D	Phosphorylase Kinase; domain 1	598	703	-	-
	Accr11g01284	949	ProSiteProfiles	Protein kinase domain profile.	628	900	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr11g01284	949	Gene3D	Ribonuclease Inhibitor	23	183	IPR032675	-
	Accr11g01284	949	FunFam	Leucine-rich repeat protein kinase family protein	184	283	-	-
	Accr11g01284	949	Gene3D	Transferase(Phosphotransferase) domain 1	704	920	-	-
	Accr11g01284	949	PANTHER	RECEPTOR-LIKE PROTEIN 55	34	899	-	-
	Accr11g01284	949	FunFam	Leucine-rich repeat family protein	28	183	-	-
	Accr11g01284	949	Gene3D	Ribonuclease Inhibitor	184	421	IPR032675	-
	Accr11g01284	949	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	704	913	-	-
	Accr11g01284	949	SUPERFAMILY	Protein kinase-like (PK-like)	611	902	IPR011009	-
	Accr11g01284	949	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	748	760	IPR008271	GO:0004672\|GO:0006468
	Accr11g01284	949	FunFam	Leucine-rich repeat protein kinase family protein	595	703	-	-
	Accr11g01284	949	SUPERFAMILY	L domain-like	44	376	-	-
	Accr11g01284	949	Pfam	Protein kinase domain	632	894	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr11g01284	Accr-Chr11	31120330	31128370	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr11g01284	1	949	Receptor kinase-like Gene Family	AT5G49760	51.775	0.0	927

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Accr11g01284		Pkinase	9.6e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr11g01284	-		-	gmx:100786172	1103.2