LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr11g01283	ATGATTCTTCTTCTGCTGCTTCTGTTCCAATTTCTGTTCATAGCAGCACATGACTCCAACCAAGACTTTACAGCTTTATCATCTCTCACTGAGTCTTGGGGAAACAAGCCACCAAATTGGGTGGGTACAGATCCTTGTGGTGGTGGTTGGGATGGCATTGGATGTACCAAATCAAGAGTGACCACAATACAATTGCCAAGCATGAACTTAACAGGCAGGTTGACGGATGATATTGGGGGATTAACTGAATTAGGAACTCTGGACCTCTCTTACAACAAAGGCATGAGTGGAAGAATTCCACCTGAAATTGGGAATTTGAGAAAATTACGAACCCTGTCATTGGTTGGTTGTGGTTTCTTTGGTCCTATTCCTGATTCATTAGGAGCTCTTAATCAGCTGACCTTTTTAGCTCTTAATCTTAATCGGTTAAGTGGGCCTATTCCACGTACGTTTGGAAATCTATCCAACGTTGATTGGCTAGATATTTCAGACAACCAAATTGAAGGACCTATCCCTATCTCTGATGAACAAGGACCTGGTCTTGACATGCTTCTCAAAACACAGCACTTGTATGCCTACCTCCCTCTATCTGAGTTTGATTTCATAATTTTTTGTACTCAGATCAGGATAAATGCAACCACAAGGAGCAGCCCAATGCACAAAGCTGCCACCAGTCACTTTGGAAACAACCACCTCTCTGGGCAAGTTCAACCGAAGCTTTTCAACTCAAATATGATACTGAAACACTTGCTTCTTGACAACAATAACCTAAGTGGCAAGATTCCAGACACTATTGGCTTAGTGAAGACATTGGAAGTGATACGCTATAACCACAATTATATGAGTGGAGAAGTACCTTCAAGTATTGGAAATCTCACAAACCTCACTGATCTGTATTTAGGCAACAATAAGCTAAATGGCTCTATGCCTGATCTTACTCGATTAAATTCACTAGCCACTGTGGATTTGAGCAACAACTCTTTTAATTCTTCCAGTATCCCTTCTTGGGCTTCAAGTTTGCCATATCTAACTACATTAACATTGGAAAACACTGGACTGCAAGGGAAAATACCTACCTCCTTATTTAGCCAGCCTAATATAGAGACTGTGATAATGAGGAATAATCAGCTCAATGGTACCTTGGATGTTAGCAACTACAAACCCAATTTGGCTCTTGTAGATTTGGGGGCTAATAAGATAACTGACTTTGCTCAGAAAGGTCAAAAAATCACTTTTGTCATACTAGTTGGCAACCCCATTTGTCTAGAAACAGGAGCTGATTCAAAGAGTTATTGCACCAACTCACAAAATAGTATCACATATTCAACAGGACCAAATAACTGTATACCTCCTTCTTGTAGATCAAACAAGGTTTCCCACAAATGTGTATTTCCCTATACAGGAATTCTGACTTCTAAAGCTCCCGAATTCTCAAACTTCGGCAACGAAAGTTATTTTTCGGAACTTGAAAATAGCTTGTTGGCCACTTTCCAGAACCTTCACCTGCCAGTGGATTTAGTTTTTCTCAGCAACCCATTCTGGGACACTTTTTCTGGTTATCTTAGTTTGGACCTAAAAGTCTTCCCATCTCAAATTGACTCTTTCAACAGAACCGGAGTTGTAAGCATTTCGTCTGTGCTCTCCAACCAGATCTATAAAGCTCCAGGATTTTTCACCCCATACATTTTTAATGGTAGCAGTAGCTATGATTTCTCCGCAGAGTGTTCTTCAACTAAAATACATACGGGGATTATAGCCGGTGCAGTAGCTACTGGTGTTGTCATTTTGGTACTGTCCATCACTGTAATATTTTTAATCCGCCAGAAGAAAAGAACGAAGGCATTTAATCCTTTTGCAAACTGGGAACAGAACAATAATAGTGGCAATGCTCCTCAGCTAAAAGGAGCACGTTGGTTTTCTTTTGAAGAGCTCAAGAAATACACCAACAACTTTTCTGACGCCAATGCTATTGGAGCCGGGGGCTATGGAAAGGTTTACCAAGCTGTTCTTTCCTCTGGGGAACTGGTCGCCGTTAAGCGTGCTTCTCAAGAATCTATGCAGGGTGCTTTTGAGTTCAAAACTGAGATTGAGCTTCTATCAAGGGTTCATCACAAGAATCTTGTTGGTCTTGTTGGATTCTGTTATGATAAAGGTGAACAAATGCTGGTTTATGAGTATGTTCCAAATGGCACTATAATGGACAGCCTTTCAGGAAAATCTGGAATTAGAATGAACTGGATAAGGAGGCTAAAAGTAGCTGTGGGAGCAGCCAGAGGGCTAGCCTATCTTCATGAACTAGCCGATCCACCAATCATACACAGGGACATAAAATCAAGTAATATCCTGCTTGATGACCACCTAAATGCAAAAGTTGCGGATTTTGGTCTCTCCAAACTTAAGGATAGTGACAGAGGCCATATCACAACTCAAGTCAAAGGCACAATGGGGTATATGGATCCTGAATACTACATGACTCAGCAGTTAACAGTAAAGAGCGATGTGTACAGCTTTGGCATTACAATGCTTGAGTTGGTAACAGCAAGGAAGCCAATAGAGCAAGGAAAGTTCATTATAAGAGAGGTTCTAAGAATAATGGATAGATCAAAGGAGTTGTATAATCTTCATGCCCTTATAGATCCAATGATAAAGCAAGAAGGAAACCCAAAAGGCTTAGAGAAATTTGTAGACTTAGCATTGAAGTGTGTCAATGATCATGCGGAAGAGAGGCCAACAATGGCTGATGTTGTTAAAGAGATTGAGAATATACTGCAACTTGCCGGTTTCAACCCCAATGCTGAATCAACATCAACATCAGAAACTTATGAAAATGCCAGTGGGGGGAAGATTTACCATCCTTATGTCGATGAAGATTTCGCCTACACCAGCGTTTTTCCACTGGTAAGGGTGGAACCTCAGTAA	2919	0.4087	MILLLLLLFQFLFIAAHDSNQDFTALSSLTESWGNKPPNWVGTDPCGGGWDGIGCTKSRVTTIQLPSMNLTGRLTDDIGGLTELGTLDLSYNKGMSGRIPPEIGNLRKLRTLSLVGCGFFGPIPDSLGALNQLTFLALNLNRLSGPIPRTFGNLSNVDWLDISDNQIEGPIPISDEQGPGLDMLLKTQHLYAYLPLSEFDFIIFCTQIRINATTRSSPMHKAATSHFGNNHLSGQVQPKLFNSNMILKHLLLDNNNLSGKIPDTIGLVKTLEVIRYNHNYMSGEVPSSIGNLTNLTDLYLGNNKLNGSMPDLTRLNSLATVDLSNNSFNSSSIPSWASSLPYLTTLTLENTGLQGKIPTSLFSQPNIETVIMRNNQLNGTLDVSNYKPNLALVDLGANKITDFAQKGQKITFVILVGNPICLETGADSKSYCTNSQNSITYSTGPNNCIPPSCRSNKVSHKCVFPYTGILTSKAPEFSNFGNESYFSELENSLLATFQNLHLPVDLVFLSNPFWDTFSGYLSLDLKVFPSQIDSFNRTGVVSISSVLSNQIYKAPGFFTPYIFNGSSSYDFSAECSSTKIHTGIIAGAVATGVVILVLSITVIFLIRQKKRTKAFNPFANWEQNNNSGNAPQLKGARWFSFEELKKYTNNFSDANAIGAGGYGKVYQAVLSSGELVAVKRASQESMQGAFEFKTEIELLSRVHHKNLVGLVGFCYDKGEQMLVYEYVPNGTIMDSLSGKSGIRMNWIRRLKVAVGAARGLAYLHELADPPIIHRDIKSSNILLDDHLNAKVADFGLSKLKDSDRGHITTQVKGTMGYMDPEYYMTQQLTVKSDVYSFGITMLELVTARKPIEQGKFIIREVLRIMDRSKELYNLHALIDPMIKQEGNPKGLEKFVDLALKCVNDHAEERPTMADVVKEIENILQLAGFNPNAESTSTSETYENASGGKIYHPYVDEDFAYTSVFPLVRVEPQ	972

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr11g01283	972	ProSitePatterns	Protein kinases ATP-binding region signature.	657	679	IPR017441	GO:0005524
	Accr11g01283	972	Gene3D	Ribonuclease Inhibitor	210	439	IPR032675	-
	Accr11g01283	972	Gene3D	Transferase(Phosphotransferase) domain 1	727	943	-	-
	Accr11g01283	972	SUPERFAMILY	L domain-like	32	421	-	-
	Accr11g01283	972	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	727	936	-	-
	Accr11g01283	972	SUPERFAMILY	Protein kinase-like (PK-like)	634	926	IPR011009	-
	Accr11g01283	972	SMART	serkin_6	651	923	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr11g01283	972	Gene3D	Phosphorylase Kinase; domain 1	621	726	-	-
	Accr11g01283	972	ProSiteProfiles	Protein kinase domain profile.	651	923	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr11g01283	972	FunFam	Leucine-rich repeat protein kinase family protein	618	726	-	-
	Accr11g01283	972	PANTHER	RECEPTOR-LIKE PROTEIN 55	27	922	-	-
	Accr11g01283	972	Gene3D	Ribonuclease Inhibitor	16	180	IPR032675	-
	Accr11g01283	972	FunFam	Leucine-rich repeat protein kinase family protein	217	311	-	-
	Accr11g01283	972	Pfam	Protein kinase domain	653	917	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr11g01283	972	CDD	STKc_IRAK	657	922	-	-
	Accr11g01283	972	FunFam	Leucine-rich repeat family protein	21	176	-	-
	Accr11g01283	972	ProSiteProfiles	Leucine-rich repeat profile.	294	316	IPR001611	GO:0005515
	Accr11g01283	972	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	771	783	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr11g01283	Accr-Chr11	31062063	31071901	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr11g01283	2	972	Receptor kinase-like Gene Family	AT5G49760	50.051	0.0	901

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Accr11g01283		Pkinase	1e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr11g01283	-		-	gmx:100786172	1117.83