LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr11g01282	ATGATTCTTCTTCTGCTGCTTCTGTTCCAATTTCTGTTCATAGCAGCACATGACTCCAACCAAGACTTTACAGCTTTATCATCTCTCACTGAGTCTTGGGGAAACAAGCCACCAAATTGGGTGGGTACAGATCCTTGTGGTGGTGGTTGGGATGGCATTGGATGTACCAAATCAAGAGTGACCACAATACAATTGCCAAGCATGAACTTAACAGGCAGGTTGACGGATGATATTGGGGGATTAACTGAATTAGGAACTCTGGACCTCTCTTACAACAAAGGCATGAGTGGAAGAATTCCACCTGAAATTGGGAATTTGAGAAAATTACGAACCCTGTCATTGGTTGGTTGTGGTTTCTTTGGTCCTATTCCTGATTCATTAGGAGCTCTTAATCAGCTGACCTTTTTAGCTCTTAATCTTAATCGGTTAAGTGGGCCTATTCCACGTACGTTTGGAAATCTATCCAACGTTGATTGGCTAGATATTTCAGACAACCAAATTGAAGGACCTATCCCTATCTCTGATGAACAAGGACCTGGTCTTGACATGCTTCTCAAAACACAGCACTTTCACTTTGGAAACAACCACCTCTCTGGGCAAGTTCAACCGAAGCTTTTCAACTCAAATATGATACTGAAACACTTGCTTCTTGACAACAATAACCTAAGTGGCAAGATTCCAGACACTATTGGCTTAGTGAAGACATTGGAAGTGATACGCTATAACCACAATTATATGAGTGGAGAAGTACCTTCAAGTATTGGAAATCTCACAAACCTCACTGATCTGTATTTAGGCAACAATAAGCTAAATGGCTCTATGCCTGATCTTACTCGATTAAATTCACTAGCCACTGTGGATTTGAGCAACAACTCTTTTAATTCTTCCAGTATCCCTTCTTGGGCTTCAAGTTTGCCATATCTAACTACATTAACATTGGAAAACACTGGACTGCAAGGGAAAATACCTACCTCCTTATTTAGCCAGCCTAATATAGAGACTGTGATAATGAGGAATAATCAGCTCAATGGTACCTTGGATGTTAGCAACTACAAACCCAATTTGGCTCTTGTAGATTTGGGGGCTAATAAGATAACTGACTTTGCTCAGAAAGGTCAAAAAATCACTTTTGTCATACTAGTTGGCAACCCCATTTGTCTAGAAACAGGAGCTGATTCAAAGAGTTATTGCACCAACTCACAAAATAGTATCACATATTCAACAGGACCAAATAACTGTATACCTCCTTCTTGTAGATCAAACAAGGTTTCCCACAAATGTGTATTTCCCTATACAGGAATTCTGACTTCTAAAGCTCCCGAATTCTCAAACTTCGGCAACGAAAGTTATTTTTCGGAACTTGAAAATAGCTTGTTGGCCACTTTCCAGAACCTTCACCTGCCAGTGGATTTAGTTTTTCTCAGCAACCCATTCTGGGACACTTTTTCTGGTTATCTTAGTTTGGACCTAAAAGTCTTCCCATCTCAAATTGACTCTTTCAACAGAACCGGAGTTGTAAGCATTTCGTCTGTGCTCTCCAACCAGATCTATAAAGCTCCAGGATTTTTCACCCCATACATTTTTAATGGTAGCAGTAGCTATGATTTCTCCGCAGAGTGTTCTTCAACTAAAATACATACGGGGATTATAGCCGGTGCAGTAGCTACTGGTGTTGTCATTTTGGTACTGTCCATCACTGTAATATTTTTAATCCGCCAGAAGAAAAGAACGAAGGCATTTAATCCTTTTGCAAACTGGGAACAGAACAATAATAGTGGCAATGCTCCTCAGCTAAAAGGAGCACGTTGGTTTTCTTTTGAAGAGCTCAAGAAATACACCAACAACTTTTCTGACGCCAATGCTATTGGAGCCGGGGGCTATGGAAAGGTTTACCAAGCTGTTCTTTCCTCTGGGGAACTGGTCGCCGTTAAGCGTGCTTCTCAAGAATCTATGCAGGGTGCTTTTGAGTTCAAAACTGAGATTGAGCTTCTATCAAGGGTTCATCACAAGAATCTTGTTGGTCTTGTTGGATTCTGTTATGATAAAGGTGAACAAATGCTGGTTTATGAGTATGTTCCAAATGGCACTATAATGGACAGCCTTTCAGGAAAATCTGGAATTAGAATGAACTGGATAAGGAGGCTAAAAGTAGCTGTGGGAGCAGCCAGAGGGCTAGCCTATCTTCATGAACTAGCCGATCCACCAATCATACACAGGGACATAAAATCAAGTAATATCCTGCTTGATGACCACCTAAATGCAAAAGTTGCGGATTTTGGTCTCTCCAAACTTAAGGATAGTGACAGAGGCCATATCACAACTCAAGTCAAAGGCACAATGGGGTATATGGATCCTGAATACTACATGACTCAGCAGTTAACAGTAAAGAGCGATGTGTACAGCTTTGGCATTACAATGCTTGAGTTGGTAACAGCAAGGAAGCCAATAGAGCAAGGAAAGTTCATTATAAGAGAGGTTCTAAGAATAATGGATAGATCAAAGGAGTTGTATAATCTTCATGCCCTTATAGATCCAATGATAAAGCAAGAAGGAAACCCAAAAGGCTTAGAGAAATTTGTAGACTTAGCATTGAAGTGTGTCAATGATCATGCGGAAGAGAGGCCAACAATGGCTGATGTTGTTAAAGAGATTGAGAATATACTGCAACTTGCCGGTTTCAACCCCAATGCTGAATCAACATCAACATCAGAAACTTATGAAAATGCCAGTGGGGGGAAGATTTACCATCCTTATGTCGATGAAGATTTCGCCTACACCAGCGTTTTTCCACTGGTAAGGGTGGAACCTCAGTAA	2814	0.4076	MILLLLLLFQFLFIAAHDSNQDFTALSSLTESWGNKPPNWVGTDPCGGGWDGIGCTKSRVTTIQLPSMNLTGRLTDDIGGLTELGTLDLSYNKGMSGRIPPEIGNLRKLRTLSLVGCGFFGPIPDSLGALNQLTFLALNLNRLSGPIPRTFGNLSNVDWLDISDNQIEGPIPISDEQGPGLDMLLKTQHFHFGNNHLSGQVQPKLFNSNMILKHLLLDNNNLSGKIPDTIGLVKTLEVIRYNHNYMSGEVPSSIGNLTNLTDLYLGNNKLNGSMPDLTRLNSLATVDLSNNSFNSSSIPSWASSLPYLTTLTLENTGLQGKIPTSLFSQPNIETVIMRNNQLNGTLDVSNYKPNLALVDLGANKITDFAQKGQKITFVILVGNPICLETGADSKSYCTNSQNSITYSTGPNNCIPPSCRSNKVSHKCVFPYTGILTSKAPEFSNFGNESYFSELENSLLATFQNLHLPVDLVFLSNPFWDTFSGYLSLDLKVFPSQIDSFNRTGVVSISSVLSNQIYKAPGFFTPYIFNGSSSYDFSAECSSTKIHTGIIAGAVATGVVILVLSITVIFLIRQKKRTKAFNPFANWEQNNNSGNAPQLKGARWFSFEELKKYTNNFSDANAIGAGGYGKVYQAVLSSGELVAVKRASQESMQGAFEFKTEIELLSRVHHKNLVGLVGFCYDKGEQMLVYEYVPNGTIMDSLSGKSGIRMNWIRRLKVAVGAARGLAYLHELADPPIIHRDIKSSNILLDDHLNAKVADFGLSKLKDSDRGHITTQVKGTMGYMDPEYYMTQQLTVKSDVYSFGITMLELVTARKPIEQGKFIIREVLRIMDRSKELYNLHALIDPMIKQEGNPKGLEKFVDLALKCVNDHAEERPTMADVVKEIENILQLAGFNPNAESTSTSETYENASGGKIYHPYVDEDFAYTSVFPLVRVEPQ	937

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr11g01282	937	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	692	901	-	-
	Accr11g01282	937	Pfam	Protein kinase domain	618	882	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr11g01282	937	ProSiteProfiles	Protein kinase domain profile.	616	888	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr11g01282	937	FunFam	Leucine-rich repeat protein kinase family protein	177	276	-	-
	Accr11g01282	937	SMART	serkin_6	616	888	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr11g01282	937	Gene3D	Transferase(Phosphotransferase) domain 1	692	908	-	-
	Accr11g01282	937	ProSitePatterns	Protein kinases ATP-binding region signature.	622	644	IPR017441	GO:0005524
	Accr11g01282	937	Gene3D	Phosphorylase Kinase; domain 1	586	691	-	-
	Accr11g01282	937	Gene3D	Ribonuclease Inhibitor	176	403	IPR032675	-
	Accr11g01282	937	SUPERFAMILY	Protein kinase-like (PK-like)	599	891	IPR011009	-
	Accr11g01282	937	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	736	748	IPR008271	GO:0004672\|GO:0006468
	Accr11g01282	937	Gene3D	Ribonuclease Inhibitor	17	175	IPR032675	-
	Accr11g01282	937	CDD	STKc_IRAK	622	887	-	-
	Accr11g01282	937	FunFam	Leucine-rich repeat family protein	21	176	-	-
	Accr11g01282	937	PANTHER	RECEPTOR-LIKE PROTEIN 55	27	887	-	-
	Accr11g01282	937	FunFam	Leucine-rich repeat protein kinase family protein	583	691	-	-
	Accr11g01282	937	ProSiteProfiles	Leucine-rich repeat profile.	259	281	IPR001611	GO:0005515
	Accr11g01282	937	SUPERFAMILY	L domain-like	32	385	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr11g01282	Accr-Chr11	31062063	31071901	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr11g01282	2	937	Receptor kinase-like Gene Family	AT5G49760	52.096	0.0	920

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Accr11g01282		Pkinase	9.4e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr11g01282	-		-	gmx:100786172	1137.87