Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g01273 ATGGAGGCGTCTTGGCCGGATTTGAAGGATATTAATCAGAAAACTAGTGATAATCATCATCATGCAGCTGCAAATTCATCAGAAGGGATTCTTGAGAACATATGGGCCAGGGTTATCAGCACAACAAAAAATAATTCATGGGAAGGGCTTCCAAATCTTGATGGAAGAGACGAGTCATCGATGGAGATTCTTCAACGGCTTCCAAGTTTGGGAAGATGGATATCTATGGGAGCTGAAGCATGGGAAGAAATTTTATCTGATTTCCCACATAACCATCTTCAAGGTACATGCAATTACAGTAACAATAATCTGGGTATTTGCAGAAACATTGAGTCCAATAGTAAAAAGGTAGAACAAGGAAAAGAAGAAGGTGGTGGTATTGTGAGGGCAAAGAATAATAATAATAAGGAAGGTGAAAGCAGAAGACATTACAGAGGAGTGAGAAGAAGGCCGTGGGGAAAATATGCAGCAGAAATAAGGGACTCATCAAGGAATGGAGCTAGGGTTTGGCTGGGGACATTTGAGACAGCTGAAGAAGCAGCTTTAGCTTATGATAAAGCAGCTTTGAGAATTAGAGGTGATAAGGCTTACTTGAATTTCCCTCTTGAGACTGTTGCAAATGCTTTAGGGTTTGACCTTAAAGGAAGTCACAGTAGCAATAATCCTATTATTACAAGGTCTGTTTCTTCAACTTGTGATCAGGAGCATTATTCTAGTAAAAGAAAATTGAGAAATATTGAAGAACCTGCAGCTAAAAGGATGGAAAACTTGGGGAATGAAGTAGATGTTGTTGTGTTTCAGGACTTGGGGAGTGATTACTTGGATAGTTTGTTATCTTCTTTTTGA 846 0.3924 MEASWPDLKDINQKTSDNHHHAAANSSEGILENIWARVISTTKNNSWEGLPNLDGRDESSMEILQRLPSLGRWISMGAEAWEEILSDFPHNHLQGTCNYSNNNLGICRNIESNSKKVEQGKEEGGGIVRAKNNNNKEGESRRHYRGVRRRPWGKYAAEIRDSSRNGARVWLGTFETAEEAALAYDKAALRIRGDKAYLNFPLETVANALGFDLKGSHSSNNPIITRSVSSTCDQEHYSSKRKLRNIEEPAAKRMENLGNEVDVVVFQDLGSDYLDSLLSSF 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g01273 281 PANTHER DNA-BINDING DOMAIN 114 276 IPR044808 GO:0003700|GO:0009873
Accr11g01273 281 SMART rav1_2 143 207 IPR001471 GO:0003700|GO:0006355
Accr11g01273 281 ProSiteProfiles AP2/ERF domain profile. 143 201 IPR001471 GO:0003700|GO:0006355
Accr11g01273 281 CDD AP2 151 201 IPR001471 GO:0003700|GO:0006355
Accr11g01273 281 Gene3D AP2/ERF domain 142 203 IPR036955 GO:0003700|GO:0006355
Accr11g01273 281 MobiDBLite consensus disorder prediction 118 145 - -
Accr11g01273 281 PRINTS Ethylene responsive element binding protein signature 144 155 IPR001471 GO:0003700|GO:0006355
Accr11g01273 281 PRINTS Ethylene responsive element binding protein signature 167 183 IPR001471 GO:0003700|GO:0006355
Accr11g01273 281 FunFam Ethylene-responsive transcription factor 2 142 203 - -
Accr11g01273 281 Pfam AP2 domain 143 193 IPR001471 GO:0003700|GO:0006355
Accr11g01273 281 MobiDBLite consensus disorder prediction 1 24 - -
Accr11g01273 281 SUPERFAMILY DNA-binding domain 143 203 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g01273 Accr-Chr11 30820069 30820914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g01273 30 281 AP2-EREBP Transcription Factor Family AT4G18450 35.093 3.86e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr11g01273 AP2 4.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g01273 - - pcin:129287234 338.191