Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g01200 ATGGGTGACCTGCAAACTTTACAAACTCTATCTTTCGCACAAAACCAATTACAAGGGCCTATTCCTGAATCACTTAGCAGCATGATAAGCATAGAGTCCATGGATCTCTCCCATAATTATTTGTCAGGTGTGATTCCAAAGTCCTTTGAGTCATTACTCCATCTTAAATACATTAATCTTTCCTACAATTTATTGTATGGAGAAATTCCAAATGGTGGCCCTTTTACAAATTTTACTGCGGAATCTTTTATGATGAATAAAGATCTGTGTGGGAAATCCCAACTACATGTCCAACCATGTAGGAAAGGAAACAAGCACGTATCAAATAAAGCGATGCTGATTATAAAATTCTTATTGCCTATCACCGTTGTCATTTCGATTGTCTTAGGAATTGTCTTTCTAAAGAGAGATGATGATAATTATTCAACCACCAACAATTTAGTCAATTTGGATATACCAACCAGGATATCCTATTTTGAGCTTCTACAGGGAACAAATGGATTTGATGAGAGTAATCTTCTTGGCTCTGGAAGTTTTGGATCAGTATACAAAGCAACTCTTTCAAATGAAGAGATAGTTGCTGTCAAAGTATTTAACTTGGACAAGGAAGAAGCATCAAAAAGTTTTGATATTGAATGTGCTGCCATGCGCAATTTACGCCATCGCAATCTCATTAAGATCATTAGTAGTTGCTCAAATGATCATTTCAAATCTCTAATAATGGAATTCATGGAAAATGGGAGCCTTGACAAATGGTTGTACTCTCATAACTATTATTTAGATGTCATGCAAAGGTTGAATATAATGATTGATGTGGCATTAGCTTTGGAGTATCTTCATCACGATTCTCCTACACTAGTTGTTCATTGTGATGTCAAACCGAGCAATGTTTTGTTGGACAAAGATATGGTGGCACATCTTAGTGATTTTGGTATTTCTAAGTTGTTTAGTGAAAGGCAATTGGAAATCTATACCGAAACTTTGGCTACAATTGGCTATATGGCACCAGAGTATGGATTGAATGGAGTTGTTTCTGCCAAAGGAGATGTGTTTAGTTATGGGATTTTGCTGATGGAAATGTTTACGAGGAAGAAGCCAACAGATGAGATGTTTGTTCAAGGATTAAGATTGAAAGATTGGGTGAGCAAATCAACACCACATTCAATTATCAACATTATAGATACGAATTTGTTGCTCCATGAAATTCAAAATACTAATAATATATTACCTCATATATCATTGGTTTTTGAGTTAGCATTAAATTGTTGCATTGACTTACCAGAGGCACGATGTGCTATGACTGATGTTGTGGTGTCATTGAAAAACATCAAGGCTTTGTTTATGGAACATGTGAAAAACACCACTAGTTGA 1371 0.3552 MGDLQTLQTLSFAQNQLQGPIPESLSSMISIESMDLSHNYLSGVIPKSFESLLHLKYINLSYNLLYGEIPNGGPFTNFTAESFMMNKDLCGKSQLHVQPCRKGNKHVSNKAMLIIKFLLPITVVISIVLGIVFLKRDDDNYSTTNNLVNLDIPTRISYFELLQGTNGFDESNLLGSGSFGSVYKATLSNEEIVAVKVFNLDKEEASKSFDIECAAMRNLRHRNLIKIISSCSNDHFKSLIMEFMENGSLDKWLYSHNYYLDVMQRLNIMIDVALALEYLHHDSPTLVVHCDVKPSNVLLDKDMVAHLSDFGISKLFSERQLEIYTETLATIGYMAPEYGLNGVVSAKGDVFSYGILLMEMFTRKKPTDEMFVQGLRLKDWVSKSTPHSIINIIDTNLLLHEIQNTNNILPHISLVFELALNCCIDLPEARCAMTDVVVSLKNIKALFMEHVKNTTS 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g01200 456 Gene3D Phosphorylase Kinase; domain 1 151 243 - -
Accr11g01200 456 FunFam Leucine-rich repeat receptor-like protein kinase 6 101 - -
Accr11g01200 456 ProSitePatterns Protein kinases ATP-binding region signature. 174 196 IPR017441 GO:0005524
Accr11g01200 456 Pfam Leucine rich repeat 6 65 IPR001611 GO:0005515
Accr11g01200 456 Pfam Protein kinase domain 169 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr11g01200 456 Gene3D Transferase(Phosphotransferase) domain 1 244 455 - -
Accr11g01200 456 FunFam Serine-threonine protein kinase plant-type 149 243 - -
Accr11g01200 456 SMART serkin_6 168 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr11g01200 456 PANTHER OS04G0122200 PROTEIN 4 445 - -
Accr11g01200 456 SUPERFAMILY L domain-like 3 88 - -
Accr11g01200 456 ProSiteProfiles Protein kinase domain profile. 168 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr11g01200 456 SUPERFAMILY Protein kinase-like (PK-like) 141 440 IPR011009 -
Accr11g01200 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672|GO:0006468
Accr11g01200 456 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 244 453 - -
Accr11g01200 456 Gene3D Ribonuclease Inhibitor 1 108 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g01200 Accr-Chr11 28220562 28222147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g01200 1 70 Receptor kinase-like Gene Family AT3G47570 37.143 1.56e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Accr11g01200 Pkinase 4.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g01200 - K13420 pcin:129285519 681.019