LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr11g01173	ATGGCGGTTCAAGTAGCAGCACCATCTTCGGTTGGCTTCACCGGCAAAATCAAGTATAGATACGATGTTTTCCTGAGTTTCAGAGGCGAAGATACTCGCAAATGCTTCACTGAGAATCTCTATGATAATTTACGCAAGAAGGGAATCAACGCCTTTATTGATGATAGAAAGCTTGGTAAAGGGGAACGAATTGCACCTTCTCTTCTTAAAGCCATAGAGAAATCAAGGATTTCCATTATTGTTTTCTCTAAGAACTACGCAACTTCCACTTGGTGCCTTGATGAACTGGCTCATATCATTCAGTGTAAGAAGGAGATGAAACAGGTGGTTATGCCCATATTTTACAAGGTGGATCCGATGGATGTTCAATATCAGAGAAACAGTTTTGAGGAAGCCATGGTTGCTCTTGAAGAAAGGTTCAGAAACGACGCAGAGAAAGATAGAAATAGTTTCGGGGAAGAAAGAACTGATCATGAAGATCGGTCGAGAAAGAACCTGGAGAAACTGCAGAAATGGAGGTCTGCTTTGTTTGAAGCTGCTAGTTTGTCATCAGCATGGCTTTTCCAAGATGGATGCGAATTTCGGTTTATTGAAAGGATTGTCGAATATGTGTATGCTATGCTTCCTCCTAAACCATACCATAACATAGAACACATGGTTGGACTTGAGCCTCGGATAGAAGAAGTGATCTCGCTTCTAAGTAAATCTGACAAAGGCGTTTGCATGTTGGGGATTCATGGAACTGGTGGCATTGGCAAAACAACCCTTGCAAAAGCTGTCTATAATTCAATCTTCAACGATTTTGAAGGTGCGTGTTTCTTGCTTGATGTCAATGAAGCATCAAAGAAATTCCAGGGCATTGTTCGTCTTCAACAAAAACTTCTATCTGAGATTCTTGAGGAAAGGATCACGAGGTTTGTTAGTGCTGGCGAAGGAATATCTAAAATAAAACACAGACTCTCTCATAAAAGAGTTTTGTTGGTTCTTGATGATGTTGATGAGATTGAACAGTTAGAACAACTTGCAGGGGGGTGTGATTGGTTTGGTTGTGGAAGCAAGGTCATTATAACGACAAGAAATAAGCAATTGCTAATTGCTCATAATGATAAAAGAACGTATGAATTGAAGGAGCTAAATGAGTGTAACTCTCTTGAGCTTTTTTGTCGGCATGCCTTTCATATGAGCCTACCTCCAAAAGGCTATCATCAAATGTCTAGTCATGTGATAAGTTACGCAAAGGGCCTTCCCCTGGCATTAAAATTGATTGGTTCCAATTTAGCAAATAAAAACAAAAAGGAATGGAGGTCTATATTGGAACAATATGACCGGATCCCAGAAAAAACAATACATGAAATATTAAAGATAAGCTATGATTGCTTACAAGATGGTGCAAAGATTATTTTCTTGGACGTTGCTTGTTTCTTTAAAGATGAGATGTTGGATTCTCTTGGTAAAATAGTACAAGCATGTTATTCTGGTGCAAGGTTTTATATTGACGTGCTTATTGATAAATCTCTTGTAGCTATTAAGGATAATGGACGTATACGCATGCATGATCTCATAAGACAAATGGGCAGAGAGATTGTAAGGAAGGAGGCACCATCGAATCCTGGCAAACATAGTAGGTTATTCAATTATAAAGATGTTCTTAAAGTACTGCAAGAAAATTCAGGAAGTAGGAGTATTGAAGGCATACTATTTGATCCACCTGAAGAAGTAGAAGTGGAGTGGAGTGGTCTCTCCTTTAAAAAGATGACTAATCTTAGATTTCTTATTATTCGAAAAGCCCAATTTTTAACAGGCCCTAAGTATCTTCCAAACAGTTTAAGATGGCTTGAATGGGAGGGATATCCTTCTACAAATTTACCACCAAAATTTTCTGCAAATAAACTAGTTTTCTTCAAGTTATGTTTCAGTCCTTTCAAGTTGGAAGAGCCATTGAAGAGATTTGAATGTTTGACATGTATGAATTTCTCAGAGTGTGAATTCATAACTGAAGTACCTGATATGTCTCAATTCCAAAGTTTAAGAAAATTGTCTTTTAGCGACTGTCACAATTTGATCAAAGTTCATGATTCTGTGGGATACCTCTCTAAGCTGGTTGAATTAGATCTTTGCGGATGTGTCAACCTTACAAGCTTTCCACATGAAATCAATATGCCATCTCTCGAAATTATTGATTTCGGTAATTGCATGAGTCTTGACTACTTCCCAAACTTAGTGGGAAAGATGGATGAATTAAAAATTATCTGGGCTGATTGGACTTCTATTGAGGAGCTTCCACCTTCCATTGGAAATCTTTTGGGGCTTGATATTTTAGGTTTAAGCAATTGCAAAAGTCTTAGGGAGATTCCAAATGGCTTATTCACATTGCCAAATATTGATATTCTTTGTTTGGGAGGCAGTAAAGGTGGTTGCAGAAAATTGCTAAATCAATTGATGCAAGAGAGCCAACCAGTTATTGGCTGCACAAACGCGCATTCATTGGATCTCCGAGATTGTTGTTTATTGGATGAAGATATTCACCTAACTCTGAATCTTTTCCGGAATTTGATAGAGTTAAATCTATCAGGGAATGATTTTGTGTCCCTTCCTGAGTGCCTCAAAGATTTTTCTAAGTTGTGGGACTTGGATGTGAGTAACTGCAAGAAGCTAAGAAATATATCAGAGTTACCATCAAGTTTGACGCATATAAAGGCAGGGAATTGCTTTTCATTAACTACAGAGTCTTTAGACTATTTATGGTCTCTAGTTTTTCTCAAGGAGTTGGAAAACCTGCAGGTCAATTTCCCAGCAACAACATTTCCTGATTGGTTCCACAATTCGTGTGAAGGAGGGAAAATTTCTTTTCTTGCTCGTAGGAATTTTCCTCCTCTTGCCATTGCTCTTGAGTTTGGGAAAGCCAAAAGAAGTAGGATACAAGACTTACAAATTTCTCTGATCATCAATGGTCGTGTATTATTACAAAAGAGACTTGTTGTCGATAATGCACAAGGTCATGTGGTTTTATTGAATCTAAGATCGTATTTTCCGTCGGAAGATTGGATGTGGCTTCAAAGATTATTCACGGAATCGGATTGGAATGATGTGGTGATACATGTCATCAGTAAAAAGCCTGATATAATTGTGGTTAAGGGTGGAGTTTACGTGTACGAACATCAAACAAACTTGGAGAATGTACAGTTCAGATCTCCTTTGCTTTCAACCACATCACGGAAACGAAGAGCCGTAGCTTCTGCTCCTCTGGATAAATGA	3255	0.3828	MAVQVAAPSSVGFTGKIKYRYDVFLSFRGEDTRKCFTENLYDNLRKKGINAFIDDRKLGKGERIAPSLLKAIEKSRISIIVFSKNYATSTWCLDELAHIIQCKKEMKQVVMPIFYKVDPMDVQYQRNSFEEAMVALEERFRNDAEKDRNSFGEERTDHEDRSRKNLEKLQKWRSALFEAASLSSAWLFQDGCEFRFIERIVEYVYAMLPPKPYHNIEHMVGLEPRIEEVISLLSKSDKGVCMLGIHGTGGIGKTTLAKAVYNSIFNDFEGACFLLDVNEASKKFQGIVRLQQKLLSEILEERITRFVSAGEGISKIKHRLSHKRVLLVLDDVDEIEQLEQLAGGCDWFGCGSKVIITTRNKQLLIAHNDKRTYELKELNECNSLELFCRHAFHMSLPPKGYHQMSSHVISYAKGLPLALKLIGSNLANKNKKEWRSILEQYDRIPEKTIHEILKISYDCLQDGAKIIFLDVACFFKDEMLDSLGKIVQACYSGARFYIDVLIDKSLVAIKDNGRIRMHDLIRQMGREIVRKEAPSNPGKHSRLFNYKDVLKVLQENSGSRSIEGILFDPPEEVEVEWSGLSFKKMTNLRFLIIRKAQFLTGPKYLPNSLRWLEWEGYPSTNLPPKFSANKLVFFKLCFSPFKLEEPLKRFECLTCMNFSECEFITEVPDMSQFQSLRKLSFSDCHNLIKVHDSVGYLSKLVELDLCGCVNLTSFPHEINMPSLEIIDFGNCMSLDYFPNLVGKMDELKIIWADWTSIEELPPSIGNLLGLDILGLSNCKSLREIPNGLFTLPNIDILCLGGSKGGCRKLLNQLMQESQPVIGCTNAHSLDLRDCCLLDEDIHLTLNLFRNLIELNLSGNDFVSLPECLKDFSKLWDLDVSNCKKLRNISELPSSLTHIKAGNCFSLTTESLDYLWSLVFLKELENLQVNFPATTFPDWFHNSCEGGKISFLARRNFPPLAIALEFGKAKRSRIQDLQISLIINGRVLLQKRLVVDNAQGHVVLLNLRSYFPSEDWMWLQRLFTESDWNDVVIHVISKKPDIIVVKGGVYVYEHQTNLENVQFRSPLLSTTSRKRRAVASAPLDK	1084

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr11g01173	1084	SUPERFAMILY	Toll/Interleukin receptor TIR domain	18	141	IPR035897	-
	Accr11g01173	1084	SMART	till_3	20	182	IPR000157	GO:0007165
	Accr11g01173	1084	Gene3D	-	210	373	IPR027417	-
	Accr11g01173	1084	MobiDBLite	consensus disorder prediction	145	164	-	-
	Accr11g01173	1084	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	21	787	IPR044974	GO:0006952
	Accr11g01173	1084	Gene3D	-	377	461	IPR042197	-
	Accr11g01173	1084	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	208	470	IPR027417	-
	Accr11g01173	1084	PRINTS	Disease resistance protein signature	695	711	-	-
	Accr11g01173	1084	PRINTS	Disease resistance protein signature	242	257	-	-
	Accr11g01173	1084	PRINTS	Disease resistance protein signature	412	426	-	-
	Accr11g01173	1084	PRINTS	Disease resistance protein signature	319	333	-	-
	Accr11g01173	1084	Gene3D	Ribonuclease Inhibitor	576	747	IPR032675	-
	Accr11g01173	1084	SUPERFAMILY	L domain-like	516	924	-	-
	Accr11g01173	1084	Gene3D	-	16	209	IPR035897	-
	Accr11g01173	1084	Pfam	TIR domain	21	153	IPR000157	GO:0007165
	Accr11g01173	1084	Gene3D	Ribonuclease Inhibitor	748	941	IPR032675	-
	Accr11g01173	1084	Pfam	NB-ARC domain	225	458	IPR002182	GO:0043531
	Accr11g01173	1084	ProSiteProfiles	TIR domain profile.	19	208	IPR000157	GO:0007165
	Accr11g01173	1084	FunFam	Disease resistance protein (TIR-NBS-LRR class)	17	209	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr11g01173	Accr-Chr11	26641519	26646956	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr11g01173	21	801	WRKY Transcription Factor Family	AT4G12020	29.161	9.99e-83	294

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr11g01173	-		-	pcin:129286217	1224.92