LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr11g01164	ATGGCGATTCAAGTTGCCTCACCAACATCCCTTGGCTTTGCTCGTAAAACAAAGTATACATATGATATTTTTCTAAGCTTCAGAGGTGAAGACACTCGCCACTCTTTCACTATGCCTCTCTACGATGCTTTGCAACGTAGGGGAATCTACGCCTTCATTGACGAAAAGGATCTTGGCAAGGGGGAAGAGATCTCACCTACACTTATTGAAGCCATTGAGAAATCGAGGATTTCAATTATTGTGTTCTCTAGGAACTATGCTACTTCCACATGGTGCCTAGAGGAGCTCGCCCACATCATTTGGTGTAAGATGCATAAGAACCATGTGGTTATGCCCATCTTTTACAAGGTAGAACCCTTGGATGTTCAGTATCAGAGAAATAGCTTTGAGGAAGCCATGACTACTCTTGAAGATAGGTTCAGAGATGACTTAGAGAAAGTCTGCAAGTGGAAGTATGCTTTATTTGAAGCTTCTAGGTCATCATCAGCATGGTTCTTCGATAATGGAAATGAAGAGAAGTTTATTGAAAGGATTGTTGAAGATGCATATGCTATGCTGCCTCCCAAACGCTTCCACAACACTGATCATATGGTTGGACTTGAGCCTCGCAAAGAGGAGGTGATGTCACTGTTGAATAAATCTGATGATCACGTTTGTATGTTGGGGATCTATGGAACTGGTGGAATTGGCAAAACAACCCTCGCGAAAGCTATTTATAATTCAATCTTCTACCAATATGAAGGTGCATGTTTTTTGTTTGATGTCAACGAAGCATCAAAGAAATATCATGGCATTGTTCATCTTCAACAGACACTTCTATCAAAGATTCTTAAAGAGAAAAGGATGAAGTTTGGTAATGTTCATGAAGGAATAGCAAAAATAAAACATAGACTGTCTCAAAAAAAGGTTTTGTTGGTTCTTGATGATGTAGATGGGGTTGAACAGTTAGAACAGCTTGCAGGGGGACGTGATTGGTTTGGTTGTGGAAGCAAGATCATAATAACAACAAGAAATAAGCAATTGCTACTTGCATGCAACGTTAAGAAAACATATGAATTGAAGGAGTTAAACTATATTTACTCTCTTAAACTCTTTTGTTGGTATGCTTTTTGTAAGAGCCAACCCCCAAAAGGCTATAAAAATATGTCCAATCATGTTATAGGGCATGTACATGGCAATCCTCTAGCTTTAAAATTGATTGGCTCCAATTTGGCACATAAAAGCATGGAGGAATGGAGATCTATATTGAAGCAATATGATGAGATCCCAGAAAGAACGATTTATCATGTACTGAAGATAAGCTATGACTGCTTACAAGACAGTGCTAAGCATACTTTCTTACATATTGCTTGTTTCTTTAATAATGTGGAATTTGAATTTGTTGGAGCAATATTAGAAGCATGTGATTGTGGGGCAAGGTATTTTATGGAGGTTCTTATTGAGAAATCTCTTATAACTATTGATGATAGTGGTTATTTGTATATGCATGATCTAATACAACAAATGGGTCGAGAGATTGTTAGGCAAGAAGCACCATCAGATCCTAGAAAACGCAGTAGATTATGGTATTACAAAGATATTCTCAAAGTATTACATGAAACTTCAGGAGGCAACAATATTGAAGGAATAATTCTTGATCCACCTCAGCAAGAAGAAGTGAATTGTAGTAGTTTTGCCTTTGAGAAGATGCATAATCTTAAAATTATCATTGTTCGCAATACCCAATTTTTAACATGTCCTAAATATCTTCCAAATAGTTTAATATTACTTGATTGGCAAGGATATCCTTCTAGGCATTTCCCACTAGGTTTTTCTCCTCCAAAACTTGTTTGCCTCAAGATATACGGAAGCCCTTTCAGCTTGGAGGAACCATTTGAGAAGTTTGCGTATTTGAAATATTTGAATTTCTCACGGTGTAAATTCATCACTGAAGTACCTGACATGTCTCAATCTCAAAATTTAAAAAAATTGACGTTTCGTGGATGTCGCAATCTGATCAAAGTTCACAGTTCGGTGGGATTTCTCTGTAAACTTATCAAATTAGATGTCAGCGGATGCATCAAACTTACGAGCTTTCCACATGAAATCAAGATGCCATCTCTTGAATTGCTTAATCTCAACAATTGCAAGAGTCTTGACTACTTTCCAAATATCATTGGAAACATGGATCCACTTAAGTATGTTCATGCAGATGGCAGTGCTATTAATGAGCTCCCATCTTCTATTGGAAATCTTCCAAGGCTTGACACTTTAAGTTTAAGAGACTGCAAAAATCTTAGGGAGCTTCCAAACAGCTTATTGAAATTGCATAATCTTGAAAGTCTTCTATTTGGAGGTCTAAAATCTCATGGAAGAAAATATTTGATGAAATTAATACAAGAGAGCCAACCATCAGTTGTTGCCTGCAGGAACATAAATCGCTTGGATCTTCCTTATTGTGGTCTATTAGATGAAGATGTTCACCTAACTCTGAAATGTTTTCAGCATGTGAGAGACTTAACTCTAACACGAAATGATTTTGTGTCTCTTCCTGAGTGCATTAAGGAATGTGTCCATTTGTGTAAACTAGAAGTGAGCGACTGCAAGAGACTTAGAGATATACCAGAGCTGCCATCAAGTTTAGTGTGCATAACGGCACAGAATTGCACATCATTATCTACTGAGTCTTCAGGCCATTTATGGGCTCAGGCCATAAATAGCTATTGCTGGGAAATCTTGATGCCGGCAACAACATATCCTGATTGGTTCGACCAATTCCATAAAGGAGGCAAATTGTGTTTTCATGTTCGTGGCAAAAATTTCCCCCGCGTCGTCGTGGCATTTGAGATAGGGAAGAAGGCCAACAGAAGTAAGAGAGAAACCTTTGATGTTTTTATGAGCATCAATGGTAGCACCAAAATGCCATGGATGCAAAGTGATTTTCCTATTGAAGCTGAAGGAGGCCGTGTTTTGGTATGTAATGATGGCAGACAAGGCCATGTGTTTTTTGGTGATCTTCTAGGAGCGTTTACAGAAGAAGAGTTGGAGGGACTTAATAAGTGTCTTGAGTTGGATTGGAATGATGTGGAAATAAAAGTTAAATTTCAAACTGTAGACATAGTTAATTGTGGAATTTATGTTGACAAGAAGAAAACAAACATGGAGAATGTGCAGTTCAAGTCTCCTTTGCTTTCAACAACTTCACTTAAACGAAGAGCCATAGCTTCTCCTTCTAATCAACCACCCAACAAGCTCCTGAGAAAGTTCAAGATCACTAATAAATTAGGAAAGATCATTAATGCAAAGAAAACAACAAAGTGA	3300	0.3782	MAIQVASPTSLGFARKTKYTYDIFLSFRGEDTRHSFTMPLYDALQRRGIYAFIDEKDLGKGEEISPTLIEAIEKSRISIIVFSRNYATSTWCLEELAHIIWCKMHKNHVVMPIFYKVEPLDVQYQRNSFEEAMTTLEDRFRDDLEKVCKWKYALFEASRSSSAWFFDNGNEEKFIERIVEDAYAMLPPKRFHNTDHMVGLEPRKEEVMSLLNKSDDHVCMLGIYGTGGIGKTTLAKAIYNSIFYQYEGACFLFDVNEASKKYHGIVHLQQTLLSKILKEKRMKFGNVHEGIAKIKHRLSQKKVLLVLDDVDGVEQLEQLAGGRDWFGCGSKIIITTRNKQLLLACNVKKTYELKELNYIYSLKLFCWYAFCKSQPPKGYKNMSNHVIGHVHGNPLALKLIGSNLAHKSMEEWRSILKQYDEIPERTIYHVLKISYDCLQDSAKHTFLHIACFFNNVEFEFVGAILEACDCGARYFMEVLIEKSLITIDDSGYLYMHDLIQQMGREIVRQEAPSDPRKRSRLWYYKDILKVLHETSGGNNIEGIILDPPQQEEVNCSSFAFEKMHNLKIIIVRNTQFLTCPKYLPNSLILLDWQGYPSRHFPLGFSPPKLVCLKIYGSPFSLEEPFEKFAYLKYLNFSRCKFITEVPDMSQSQNLKKLTFRGCRNLIKVHSSVGFLCKLIKLDVSGCIKLTSFPHEIKMPSLELLNLNNCKSLDYFPNIIGNMDPLKYVHADGSAINELPSSIGNLPRLDTLSLRDCKNLRELPNSLLKLHNLESLLFGGLKSHGRKYLMKLIQESQPSVVACRNINRLDLPYCGLLDEDVHLTLKCFQHVRDLTLTRNDFVSLPECIKECVHLCKLEVSDCKRLRDIPELPSSLVCITAQNCTSLSTESSGHLWAQAINSYCWEILMPATTYPDWFDQFHKGGKLCFHVRGKNFPRVVVAFEIGKKANRSKRETFDVFMSINGSTKMPWMQSDFPIEAEGGRVLVCNDGRQGHVFFGDLLGAFTEEELEGLNKCLELDWNDVEIKVKFQTVDIVNCGIYVDKKKTNMENVQFKSPLLSTTSLKRRAIASPSNQPPNKLLRKFKITNKLGKIINAKKTTK	1099

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr11g01164	1099	FunFam	Disease resistance protein (TIR-NBS-LRR class)	17	187	-	-
	Accr11g01164	1099	Pfam	TIR domain	21	182	IPR000157	GO:0007165
	Accr11g01164	1099	Pfam	NB-ARC domain	203	421	IPR002182	GO:0043531
	Accr11g01164	1099	Gene3D	-	356	439	IPR042197	-
	Accr11g01164	1099	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	190	449	IPR027417	-
	Accr11g01164	1099	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	21	765	IPR044974	GO:0006952
	Accr11g01164	1099	Gene3D	Ribonuclease Inhibitor	537	722	IPR032675	-
	Accr11g01164	1099	SMART	till_3	20	160	IPR000157	GO:0007165
	Accr11g01164	1099	SUPERFAMILY	L domain-like	508	891	-	-
	Accr11g01164	1099	SUPERFAMILY	Toll/Interleukin receptor TIR domain	18	159	IPR035897	-
	Accr11g01164	1099	Gene3D	-	15	189	IPR035897	-
	Accr11g01164	1099	PRINTS	Disease resistance protein signature	220	235	-	-
	Accr11g01164	1099	PRINTS	Disease resistance protein signature	297	311	-	-
	Accr11g01164	1099	PRINTS	Disease resistance protein signature	696	712	-	-
	Accr11g01164	1099	PRINTS	Disease resistance protein signature	390	404	-	-
	Accr11g01164	1099	SUPERFAMILY	"Winged helix" DNA-binding domain	426	531	IPR036390	-
	Accr11g01164	1099	Gene3D	Ribonuclease Inhibitor	723	894	IPR032675	-
	Accr11g01164	1099	ProSiteProfiles	TIR domain profile.	19	186	IPR000157	GO:0007165
	Accr11g01164	1099	Gene3D	-	190	352	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr11g01164	Accr-Chr11	26295838	26300952	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr11g01164	21	863	WRKY Transcription Factor Family	AT4G12020	30.405	4.86e-92	322

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr11g01164	-		-	pcin:129284776	1363.98