LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr11g01143	ATGGATTCAGAACAAAGGGAGAAGAATGGAACAATTCTGATGCAGAAATACGAGCTAGGCCGTTTGCTAGGCCAAGGTACATTCGCCAAAGTCTACCACGCCAGAAACATCCAAAACAACCAGAGCGTTGCCATTAAAGTCATCAACAAGCAAAAAATTTTCCGAAACGGCTTAATCGACCAAATCAAGCGCGAGATCTCGGTGATGCACCTCGTAAGGCACCCAAACATCGTTCAGCTCTACGAAGTAATGGCGAGCAAGAACAAGATCTACTTCGCGATGGAGTACGTCAAAGGCGGTGAGCTCTTCGCCAAAGTCGCGAAAGGGAAATTGAAGGAGGATTTGGCGCGAAAGTATTTCCAGCAGCTAATCGGCGCCGTCGATTTCTGCCATAGCAGAGGGGTTTATCACCGAGATCTGAAACCGGAGAATCTGCTTCTGGACGAAAATGGGGATCTGAAGATTACGGATTTTGGATTGAGTGCTTTGTATGAACCCAAAAAGAACGATGGTCTTCTCTATACAACTTGTGGGACCCCAGCTTATGTTGCCCCTGAAGTTCTCAACAGGAACGGCTACAATGGAGTCAAAGCTGATATATGGTCTTGTGGGGTTATTCTGTTTGTTCTTCTTGCAGGTTTTCTTCCATTTCAGGATAATAATCTCATTGAAATGTATAGGAAAATTAGTATTGCAGAATTCAACTGTCCCAGATGGTTTTCACCTCAAACCAGAAAACTCATCACCAGAATTCTAGATCCAAATCCAAGAACAAGAGTATGTATTTCTAAGATTATGGAAAATTGCTGGTTTAAAATCGGGTATCAAAAGATTGAACTACCCAAATCACCAGTTTCCAATCCTACCAGTGATGTTCAGGCTGTTTTTGACTCTTCATCATCAAGTCCAGAAGAAAAAACCAAAGAAACCGCAATAAACGTGAAACCATCTGTCTTCAATGCGTTTGATTTAATTTCCCTATCTTCAGGGTTTGATCTCTCTGGTTTGTTTGAGGAAGATAATTGTAGGAGACAACATGCTAGATTCACCACCACAAAACCGGCCTCTACGATTGTGTCGAAACTGGAAGAAATCGCACAAGCAGAGAGGAAATTCAAAGTGTTGAAGAAAGATGGATTCGTGAGATTGGAGGGAAACGAAACAGGTCGGAAGGGACAACTTGGTATTGATGCAGAGATTTTTGAGGTGACATCAACGTTTCATGTTGTGGAGGTGAAGAAAACTGCAGGAGATACGTTTGAGTATATTGAGTTTAGAGATCAGAGCTTGAAGCCTTCATTAAAGGATATAGTCTGGGCTTGGCAAGGAGGTGAGCAATAG	1341	0.4258	MDSEQREKNGTILMQKYELGRLLGQGTFAKVYHARNIQNNQSVAIKVINKQKIFRNGLIDQIKREISVMHLVRHPNIVQLYEVMASKNKIYFAMEYVKGGELFAKVAKGKLKEDLARKYFQQLIGAVDFCHSRGVYHRDLKPENLLLDENGDLKITDFGLSALYEPKKNDGLLYTTCGTPAYVAPEVLNRNGYNGVKADIWSCGVILFVLLAGFLPFQDNNLIEMYRKISIAEFNCPRWFSPQTRKLITRILDPNPRTRVCISKIMENCWFKIGYQKIELPKSPVSNPTSDVQAVFDSSSSSPEEKTKETAINVKPSVFNAFDLISLSSGFDLSGLFEEDNCRRQHARFTTTKPASTIVSKLEEIAQAERKFKVLKKDGFVRLEGNETGRKGQLGIDAEIFEVTSTFHVVEVKKTAGDTFEYIEFRDQSLKPSLKDIVWAWQGGEQ	446

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr11g01143	446	FunFam	Non-specific serine/threonine protein kinase	11	312	-	-
	Accr11g01143	446	SMART	serkin_6	17	271	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr11g01143	446	FunFam	Non-specific serine/threonine protein kinase	314	439	-	-
	Accr11g01143	446	Gene3D	Kinase associated domain 1, KA1	313	440	-	-
	Accr11g01143	446	Pfam	Protein kinase domain	17	271	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr11g01143	446	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	135	147	IPR008271	GO:0004672\|GO:0006468
	Accr11g01143	446	ProSitePatterns	Protein kinases ATP-binding region signature.	23	46	IPR017441	GO:0005524
	Accr11g01143	446	Pfam	NAF domain	316	375	IPR004041	GO:0007165
	Accr11g01143	446	ProSiteProfiles	Protein kinase domain profile.	17	271	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr11g01143	446	ProSiteProfiles	NAF domain profile.	314	338	IPR018451	GO:0007165
	Accr11g01143	446	Coils	Coil	358	378	-	-
	Accr11g01143	446	CDD	STKc_SnRK3	16	270	-	-
	Accr11g01143	446	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	6	424	-	-
	Accr11g01143	446	CDD	CIPK_C	320	435	-	-
	Accr11g01143	446	FunFam	Non-specific serine/threonine protein kinase	8	96	-	-
	Accr11g01143	446	Gene3D	Transferase(Phosphotransferase) domain 1	97	276	-	-
	Accr11g01143	446	SUPERFAMILY	Protein kinase-like (PK-like)	13	322	IPR011009	-
	Accr11g01143	446	Gene3D	Phosphorylase Kinase; domain 1	6	96	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr11g01143	Accr-Chr11	25195737	25197077	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr11g01143	7	443	CBL-interacting serine-threonine protein kinases	AT5G45820	66.968	0.0	613

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Accr11g01143		Pkinase	1.7e-74	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr11g01143	K07198		-	vvi:100258329	634.409