LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr11g01142	ATGGCGGAGGTTGTCGTTTCGACGAAGAAGAAGAACAAAGATAATCTCTTACTCAGCCGTTTCGAAGTCGGAAAACTCCTCGGCCATGGAACCTTCGCGAAGGTCTACTTCGCTAAAAACATCAAAACCAACGAAGGCGTCGCCATCAAAATCATCGACAAAGAGAAAATCCTCAAAGGCGGCTTAGTCGCTCACATCAAGCGCGAGATCTCGATCCTCCGCCGTGTCCGCCACCCTAACATCGTCCAGCTCTTCGAAGTCATGGCCACGAAGACCAAGATCTACTTCGTCATGGAATACGTCCGCGGCGGCGAGTTATTCAATAAAGTCGCAAAAGGGAGGTTAAAGGAAGAAGCGGCAAGAAAATATTTCCAGCAATTAATCTCCGCCGTAGGATTCTGCCACGCCAGAGGTGTGTACCACCGCGATCTGAAGCCGGAAAACTTGTTGCTCGACGAAAATGGCGATCTCAAGGTTTCCGATTTCGGCCTTAGCGCCGTCTCCGATCAAATCAGACAAGACGGGTTGTTCCATACTTTTTGTGGAACGCCGGCGTATGTTGCTCCTGAGGTTCTGGCAAGAAAAGGATACGACGGAGCCAAAGTTGATCTCTGGTCTTGTGGCGTTGTCCTTTTCGTTTTAACGGCTGGTTATTTACCATTCCATGATCAGAACATTATGGCAATGTACAAGAAAATTTACAAAGGCATTTTCCGGTGTCCCAAGTGGTTCTCGTCGGGGCTAAGTTTATTATGTACTCGTCTTCTCGATACAAATCCCGAAACCAGAATCTCAATTCCAGAAATCATGGAAAACAGGTGGTTCAAGAAAGGTTTCAAACAAATCAAGTTCTATTTCGAGGACGATAAGATCTGTACCAGTGTTGACGATATTAGCACACCGGATTTAAACCAAGACGACATAGAATCAGTCTCTTCGGTATCAGAGTCGGACTCAGAGCTAGAGGTTAAAAGAAGGAACGCTTCATTGCCAAGACCAGCAAGCTTGAATGCATTTGATATAATATCATTCTCTGCAGGGTTTGATCTTTCTGGTTTGTTCGAGGAGAAAGGGGATGAGGCCAGGTTCGTGTCTAGCGCGCCGGTGTCGGAGATTGTATCAAAGTTGGAGGAAATTGCGGAGGTGGTTAGCTTTAAGGTGAGGAGGAAGGATTGCAGGGTGAGCTTGGAGGGATGGAAGGAAGGTGTGAAGGGGCCATTGACGATTGCGGCGGAGATATTTGAGCTAACTCCGTCGTTGGTGGTGGTGGAGTTGAAGAAGAAAGCAGGGGACAATAAAGAGTATGAACAGTTTTGTAACTCTGAATTGAAACCAGCCTTGCACAAGTTGATGATGAAATATGAATCAGCAGCTCCTTCTTCTTCTTCTTCAAAGATAAATTCTTCTGATGACATTCCTCAAACTGATACTGATTCATAG	1440	0.4611	MAEVVVSTKKKNKDNLLLSRFEVGKLLGHGTFAKVYFAKNIKTNEGVAIKIIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEAARKYFQQLISAVGFCHARGVYHRDLKPENLLLDENGDLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDLWSCGVVLFVLTAGYLPFHDQNIMAMYKKIYKGIFRCPKWFSSGLSLLCTRLLDTNPETRISIPEIMENRWFKKGFKQIKFYFEDDKICTSVDDISTPDLNQDDIESVSSVSESDSELEVKRRNASLPRPASLNAFDIISFSAGFDLSGLFEEKGDEARFVSSAPVSEIVSKLEEIAEVVSFKVRRKDCRVSLEGWKEGVKGPLTIAAEIFELTPSLVVVELKKKAGDNKEYEQFCNSELKPALHKLMMKYESAAPSSSSSKINSSDDIPQTDTDS	479

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr11g01142	479	Pfam	NAF domain	333	388	IPR004041	GO:0007165
	Accr11g01142	479	CDD	STKc_SnRK3	20	274	-	-
	Accr11g01142	479	ProSitePatterns	Protein kinases ATP-binding region signature.	27	50	IPR017441	GO:0005524
	Accr11g01142	479	FunFam	Non-specific serine/threonine protein kinase	12	100	-	-
	Accr11g01142	479	CDD	CIPK_C	337	447	-	-
	Accr11g01142	479	ProSiteProfiles	Protein kinase domain profile.	21	275	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr11g01142	479	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	139	151	IPR008271	GO:0004672\|GO:0006468
	Accr11g01142	479	FunFam	Non-specific serine/threonine protein kinase	333	451	-	-
	Accr11g01142	479	SUPERFAMILY	Protein kinase-like (PK-like)	17	315	IPR011009	-
	Accr11g01142	479	Gene3D	Kinase associated domain 1, KA1	332	453	-	-
	Accr11g01142	479	Pfam	Protein kinase domain	21	275	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr11g01142	479	SMART	serkin_6	21	275	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr11g01142	479	ProSiteProfiles	NAF domain profile.	331	355	IPR018451	GO:0007165
	Accr11g01142	479	MobiDBLite	consensus disorder prediction	456	479	-	-
	Accr11g01142	479	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	9	442	-	-
	Accr11g01142	479	MobiDBLite	consensus disorder prediction	455	479	-	-
	Accr11g01142	479	FunFam	Non-specific serine/threonine protein kinase	10	325	-	-
	Accr11g01142	479	Gene3D	Transferase(Phosphotransferase) domain 1	10	331	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr11g01142	Accr-Chr11	25186533	25187972	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr11g01142	3	479	CBL-interacting serine-threonine protein kinases	AT4G18700	73.958	0.0	729

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Accr11g01142		Pkinase	4.7e-72	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr11g01142	-		-	gmx:100790133	745.347