Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g01113 ATGACAAGGGCTGTGCGCAGTAGGATACTCAAGGATGCGAATGGTGATATTAGTGACCATCTACGCAACCACATCCATTTAACAAATTGCATTCACTTGAAGAACCATATGCACAAGAACAGCCCCATTCTTGCTGATAGGTCGCTTATGAGGGACCTAGTTGTGTTGCAGAGGTCACGCTCTCTGAGAGACCCTTCAGCAAGTCCTCCTTCATGGCATTCTCCTTCTATAATTGAGGTGCTTTCTAAGAGGATGGACAATGATGCTGCGGTTCAGGAGGGAAGAAGGTCTGTAGGAATTGAACGCAAGAAAGAAGGAAGGCGATTGTCTGGAACCTCACCACCTGTTGTTAGTTTAGGTCCTTCAAAAGTTGCTCCGGGCGAAGAGAGCCGGGGTTATGATGGAGGAGGGTCGGTGAGTAGAGACAGAAGTAGCAGGAGTGGAATTGGGGGTGGGCGGAAAGTTGGAAGAGATGAGTCTAGTAGGAAGAGTGATAGGCCTGATTACATGGGTCTCAGTGAAGAGCAACTTCACAGTCAACTTGGCAAAGATTTGGCTGAGGATGTTATTTCAAGGCATTCTGAATCTAAAGAGAGAAGGAGCAAACAAAGGGGAAAGCATGTTCAAGATGTTCAGGCTAAGACCCTTTCTGAGCAGCTGAATGATGTTCCAATGGATAGTGATGATTTGGCATCTTCAAACAATAATGTTCACAGAAGGTTTCCCAGGCAGCATAAAATTATTGAGGCACCAGAAGCCAGCACACGTGGTCATGGAAATGGAGTGAATAGGGGGAAAAGACGTAAATTTCGAAGTGCAAGAAGAGCTCGAGCTTCTGTGGCATCTAAAGATACTGGAGCTGAGAATCAACTGTCTGTTGCTTCCAACTCATTTGCTCATGGTTCAGCCCACCATAAATATCACATGGAAGAGGCAGATGAGTATGGAGAAGAAAATGTCACCAGGGCACCCAAGAATGGGTGTGGCATTCCTTGGAATTGGTCTCGAATTCATCACAGAGGTAAAACATTCCTTGACAAGGCTGGACGAAGCTTTTCTTGTGGTTTATCTGATTCAAGACTAAAGAAAGGGGCATTGGATGCCAATGGAAGAAATATTTCTGACATGCCTGTAGCTTCTGATCAATCAAGCTCATTTACCAGGTCTGAAGGAGAGGCGCTACCGCTACTAGTTGAGGCATCTGGATCTCAGGGAAGCACTGAGAATGCTTGTTGGGCGCATGACTATTCTGGGGAGCTTGGTATTTTTGCTGATAATTTATTGAAGCGTGACATTGATTCTGACCTCGCTTCTGAAGCTAGATCTGGGGATCAGCATAAGATGAGAGGGAATCGCCATGGCAGGCATCAAAGCTTAACGCAAAAATATCAGCCACAAACCTTCGGAGATTTAGTTGGCCAGAATTTGGTGGCACAAGCTCTTTCAAATGCAGTCATAAGAAGAAAAATTGGATTTCTTTATGTTTTTTATGGACCCCATGGCACTGGAAAAACTTCCTGTGCTCGGATATTTGCTAGAGCTTTAATTTGTCATTCTTCTGAACCCCCAAAACCATGTGGCTTTTGCAATTCTTGTGTAGCACATGATACGGGCAAGAGCAGAAATATAAGGGAAGTTGGTCCAGTCAGTAATTTTGACTTTGAGAGCATCATGGATCTACTTGACAACATGATTGTTTCCCGGCTTGCATCACAATACAGAGTGTTTATTTTTGATGATTGTGATACTCTGTCAGCTGAATGCTGGAGTGCCATGTCGAAGGTCATTGATCGAGCTCCTAGACGTGTGGTTTTTATACTTGTTAGTTCGTCTCTTGATGGATTGCCTCATATAATCATATCCAGGTGTCAGAAATTTTTCTTCCCAAAGCTGAAGGATTCAGACATTATGGATACATTACAGAGGATTGCGAAAAAAGAGGGTTTAAAAATTGATAGTGATGCCTGGAAACTTATTGTATCAAGATCAGATGGATCATTGAGAGATGCTGAGATGACCCTTGAACAGCTTAGTTTGCTTGGGCAGAGAATATCAGTTCCTCTTGTCCAGGAATTAGTTGGGCTTATCTCTGACGAGAAATTGGTTGATCTGCTTGATTTGGCACTATCCGCAGACACAGTCAACACTGTGAAGAATCTGAGAGTGATAATGGAAACTGGTGTTGAGCCGTTAGCCTTAATGTCACAGCTTGCAACTGTAATTACTGACATACTTGCAGGGACCTATGATTTCACAAGAGAAAGGAGGAGAAGGAAGTTTTTCCGGAGACATCCATTATTGAAAGAAGATATGGAAAAGCTGCGTCAAGCTTTGAAAACTTTGTCTGAGGCTGAGAAGCAGTTGAGGATGTCCAATGACAAACTAACCTGGCTGACAGCTGCATTGCTTCAACTCGCTCCTGACCAGCAATATATGCTGCCAACATCATCTGATAACAGTTTCAATCATAGTCCCTTGCCCCAAAATAATGCAGATGGGAGAGAATCTGCCCGAAGAACAAGTACTAATGCTGAAATTCCTCGCAAAGAGAGGTGTTTATCAACGGATTATAGAATGGAGAAAATCCACACTGCTAGTTCTGCTGATGGTATGGCAAAGAGTGTTAGTTCAGATAATAAAAGACTTGCTGTGGCCGAACAGATATCTTCACATGCTACTGATATGATTAGAATGAATGACCGACAGACTCTGAGTAAAGACCGGAAAGGAGTTGAAGAGATATGGTTGGAGGTGCTTGACAGAATTCAGGATAATGGTCTAAAAGAGTTTTTAAATAGAGAGGGGAAGCTAGTCTCTGTTAGTTTTGGTGCAGCTCCAACCGTGCAGTTAATGACTAGTTCCCAACAGACCAAATCTACGACTGAGAAGTACAGGGGCCATATTTTACAGGCATTTGAATCTGTCCTTGGATCTCCTGTAACGTTAGAAATTAGATTTGAATCAAACAGAGATGCAGGATCAGGGTCTCAACTCCCTCTTATACTGCCTGCTACCAAAGATGGTTGTTCTGTAGAAAAGAAAATGAGTGAAATTGTAGAAGAAGAAGCAGCTTCTCCGAAGGACCACAAGAATAATAAGCAGCATAACAAAAAGCCAATGGTGACTTCACACTTAGAAAGAATGAGGCTTAGAGAACAAGGTCAGAGCCGAAGCATTGTGAAAAGTAAGTTATCTCTTGCTCATGTAATCCAGCAGGCAGAAGGACATTCACAGCGTAGTGGCTGGTCAAAACGCAAAGCAGTTTCCATTGCTGAAAAGCTTGAACAAGAGAATCTGAGATTAGAGCCAAGATCAAGGACCTTGCTATGCTGGAAAGCATCACGAGTAACGCGGCGGAAGCTTTCGCGTTTGAAAGTTAGGACCAGAAAACCTCATGCGTTGCTTAATCTGGTCTCATGTGGAAGATGTCTCAGTTCTAAATCTCCAAGGTAG 3453 0.433 MTRAVRSRILKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSLMRDLVVLQRSRSLRDPSASPPSWHSPSIIEVLSKRMDNDAAVQEGRRSVGIERKKEGRRLSGTSPPVVSLGPSKVAPGEESRGYDGGGSVSRDRSSRSGIGGGRKVGRDESSRKSDRPDYMGLSEEQLHSQLGKDLAEDVISRHSESKERRSKQRGKHVQDVQAKTLSEQLNDVPMDSDDLASSNNNVHRRFPRQHKIIEAPEASTRGHGNGVNRGKRRKFRSARRARASVASKDTGAENQLSVASNSFAHGSAHHKYHMEEADEYGEENVTRAPKNGCGIPWNWSRIHHRGKTFLDKAGRSFSCGLSDSRLKKGALDANGRNISDMPVASDQSSSFTRSEGEALPLLVEASGSQGSTENACWAHDYSGELGIFADNLLKRDIDSDLASEARSGDQHKMRGNRHGRHQSLTQKYQPQTFGDLVGQNLVAQALSNAVIRRKIGFLYVFYGPHGTGKTSCARIFARALICHSSEPPKPCGFCNSCVAHDTGKSRNIREVGPVSNFDFESIMDLLDNMIVSRLASQYRVFIFDDCDTLSAECWSAMSKVIDRAPRRVVFILVSSSLDGLPHIIISRCQKFFFPKLKDSDIMDTLQRIAKKEGLKIDSDAWKLIVSRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTRERRRRKFFRRHPLLKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYMLPTSSDNSFNHSPLPQNNADGRESARRTSTNAEIPRKERCLSTDYRMEKIHTASSADGMAKSVSSDNKRLAVAEQISSHATDMIRMNDRQTLSKDRKGVEEIWLEVLDRIQDNGLKEFLNREGKLVSVSFGAAPTVQLMTSSQQTKSTTEKYRGHILQAFESVLGSPVTLEIRFESNRDAGSGSQLPLILPATKDGCSVEKKMSEIVEEEAASPKDHKNNKQHNKKPMVTSHLERMRLREQGQSRSIVKSKLSLAHVIQQAEGHSQRSGWSKRKAVSIAEKLEQENLRLEPRSRTLLCWKASRVTRRKLSRLKVRTRKPHALLNLVSCGRCLSSKSPR 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g01113 1150 CDD HLD_clamp_pol_III_gamma_tau 631 694 IPR045085 -
Accr11g01113 1150 MobiDBLite consensus disorder prediction 152 172 - -
Accr11g01113 1150 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 685 IPR027417 -
Accr11g01113 1150 MobiDBLite consensus disorder prediction 190 211 - -
Accr11g01113 1150 Pfam DNA polymerase III subunits gamma and tau domain III 687 746 IPR022754 GO:0003887
Accr11g01113 1150 NCBIfam DNA polymerase III subunit gamma/tau 457 805 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Accr11g01113 1150 Coils Coil 764 794 - -
Accr11g01113 1150 MobiDBLite consensus disorder prediction 190 217 - -
Accr11g01113 1150 MobiDBLite consensus disorder prediction 88 172 - -
Accr11g01113 1150 FunFam DNA polymerase III subunit gamma/tau 632 694 - -
Accr11g01113 1150 Gene3D - 449 628 IPR027417 -
Accr11g01113 1150 SUPERFAMILY post-AAA+ oligomerization domain-like 702 805 IPR008921 GO:0003677|GO:0006260
Accr11g01113 1150 MobiDBLite consensus disorder prediction 249 288 - -
Accr11g01113 1150 MobiDBLite consensus disorder prediction 814 837 - -
Accr11g01113 1150 Pfam DNA polymerase III, delta subunit 474 631 - -
Accr11g01113 1150 MobiDBLite consensus disorder prediction 88 109 - -
Accr11g01113 1150 MobiDBLite consensus disorder prediction 438 459 - -
Accr11g01113 1150 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 460 861 - -
Accr11g01113 1150 MobiDBLite consensus disorder prediction 261 276 - -
Accr11g01113 1150 Gene3D - 632 694 - -
Accr11g01113 1150 SMART AAA_5 490 631 IPR003593 GO:0016887
Accr11g01113 1150 MobiDBLite consensus disorder prediction 814 849 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g01113 Accr-Chr11 23892246 23899128 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g01113 457 743 Core DNA Replication Machinery Family AT1G21690 22.222 1.18e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g01113 - - gmx:100793832 1643.25