Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g01106 ATGGCTTCGGGGGCTATATTCTCGTCGTTGCGGCGGAGGAGGTCGCCGACGTTGGAAGCCTTCCTTGCTCCGGTTGACTTGTCCGATGTTGCTCTGGTTCAAACCCTCGTCACTGTGGCTAGCGAGCTCGTCACGTGCTTTTCCGGACGCTCTTTCTTCTTCCAGCGCAAGAACTCGCGGTCGCTCATACGAAAGGTCGAGGGCTTTCAGTTACTTTTGGAATATTTGACGGACACTGGCGCGTGTATTCCACCGACGGCGGTTCTCTGTTTGAAGGAGCTTTATTTGCTATTGTACCGGTCGAAGATTCTTCTTGACTATTGCGCACAATCGAGTAAGTTATGGCTTTTGCTCCAGAACCATTCAATATCTGGCCATTTCCATGATTTGAACCAGGAAGTGTCGACCATTCTGGATGTATTTCCTATTAACGATGTCAAATTAAGTGAGGATGTCAGGGAACAGATTGAGCTTTTGAAAAAACAGTCAAGGAATGCTAAGTTATTCATAGACCAGAAAGATGATGATCTTAGGATTCGCTTCTTGTCTTTTCTTGATGAATTTGAAAATGGTAAAGTCCCTGACTCATCAGAATTAAGGTCTTTGTTTCTGGAGAAATTGAAGATTCTAGATGCTAGAAGTTGCAGAAGAGAAATTGAGTCTTTGGAGGAGCAGATTGTGCACCATGAGGGAGACGTTGAACCAACAATTTCTGTGCTTAATGGGCTTGTTGCTTTGACACGGTATTGCAGGTTTTTGCTTTTCGGATTTGAGGAAGATGAGCTAGAGTTAAGCAGTGGGAATAAGAAAAAACCCAAAAGGGGATTGATTAGTCAAGAAATTGCTGGAACGTTTATGAGTATTCCCAAGGATTTCTGCTGTCCAATAACATTGGATCTCATGCGTGACCCAGTTATAATTTCCACAGGACAGACGTATGATCGAAGTTCCATATCCCGGTGGATAGAGGATGGCCACTGCACTTGTCCAAAAACTGGGCAAATGCTTAGTAACACACGCCTTGTTCCTAATCGATCTCTTAGGAATTTGATCATGCAATGGTGCACTGCACATGGAAATTCCTACGACCCACCAGAGGTCATCGATCCTTCAGTTGAATTTTTCGCATCAACTTCTCCTACCAAGGCTGCCCTTGAAGCCAACAGAGCAACTGCATCATTTCTCATTCAGCAGCTTGCAGATGGGTCACAAGTTGCAAAGACTGTAGCTGCTCGGGAGATTCGACTGCTAGCAAAAACAGGAAAAGAAAATCGGGCCTTCATCGCAGAAGCTGGGGCTATTCCTCATCTTCAAAAGTTACTCTCCTCTTCCAACGCGGTTGCCCAAGAGAATTCTGTAACTGCATTACTCAACCTATCAATTTATGAGAAGAACAAAAGTCGGATAATGGACGAGGAAGGATGTCTGGCATCAATAGTTGACGTGTTGAGATTTGGGCAAACAACAGAGGCAAGGGAAAATGCTGCCGCAACATTGTTCAGTCTCTCTGCTGTCCATGACTACAAGAAGAGAATTGCAGATCAGGTAGGAGCTGTGGAAGCCCTGGCTGATTTGTTGCAAGAGGGAACGCCAAGAGGGAAGAAGGATGCTGTGACAGCTTTGTTTAATCTTTCCACCCACAATGAGAATTGTGCTAGAATGATTAAAGCAGGGGCTGTTACAGCTCTAGTTGTGGCTTTGGGAAATGAAGGAGTTGCCGAGGAAGCAGCAGGTTCCTTGGCCTTGATTGTTCGCCAATCTATCGGGGCCAAGGCTGTGGTTAATGAGGAAGCAGCTGTAGCTGGATTAATTGGAATGATGCGATGTGGGACACCAAGAGGTAAAGAGAATGCAGTTGCGGCCTTGCTTGAGTTGTGCAAGACTGGGGGTCCGGTTGCAACTGAAAGGGTGATTAGGGCACCGGCTTTGGCAGGACTGCTTCAAACCCTGCTTTTCACCGGGACAAAGCGGGCAAGAAGAAAAGCAGCTTCGCTGGCTAGGGTGTTTCAGAGATGTGAAAATGCATCTTTGCATTATGGTGGTTTAGGTGTAGGGTATCCATATCCTAGCAATTCAGCTGCAGACAGGGATACGAGCTTTGCCGGTGATGTATCAGTACCAATGTCCATTTCTGTACCTGTTGTGTAG 2148 0.4604 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALVQTLVTVASELVTCFSGRSFFFQRKNSRSLIRKVEGFQLLLEYLTDTGACIPPTAVLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEVSTILDVFPINDVKLSEDVREQIELLKKQSRNAKLFIDQKDDDLRIRFLSFLDEFENGKVPDSSELRSLFLEKLKILDARSCRREIESLEEQIVHHEGDVEPTISVLNGLVALTRYCRFLLFGFEEDELELSSGNKKKPKRGLISQEIAGTFMSIPKDFCCPITLDLMRDPVIISTGQTYDRSSISRWIEDGHCTCPKTGQMLSNTRLVPNRSLRNLIMQWCTAHGNSYDPPEVIDPSVEFFASTSPTKAALEANRATASFLIQQLADGSQVAKTVAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLSSSNAVAQENSVTALLNLSIYEKNKSRIMDEEGCLASIVDVLRFGQTTEARENAAATLFSLSAVHDYKKRIADQVGAVEALADLLQEGTPRGKKDAVTALFNLSTHNENCARMIKAGAVTALVVALGNEGVAEEAAGSLALIVRQSIGAKAVVNEEAAVAGLIGMMRCGTPRGKENAVAALLELCKTGGPVATERVIRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYPYPSNSAADRDTSFAGDVSVPMSISVPVV 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g01106 715 FunFam RING-type E3 ubiquitin transferase 364 685 - -
Accr11g01106 715 Gene3D - 374 510 IPR011989 -
Accr11g01106 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Accr11g01106 715 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Accr11g01106 715 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Accr11g01106 715 SUPERFAMILY ARM repeat 393 669 IPR016024 -
Accr11g01106 715 SUPERFAMILY RING/U-box 276 362 - -
Accr11g01106 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 363 IPR013083 -
Accr11g01106 715 PANTHER U BOX DOMAIN-CONTAINING 82 672 - -
Accr11g01106 715 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Accr11g01106 715 Coils Coil 212 232 - -
Accr11g01106 715 Gene3D - 511 667 IPR011989 -
Accr11g01106 715 SMART arm_5 506 546 IPR000225 GO:0005515
Accr11g01106 715 SMART arm_5 547 585 IPR000225 GO:0005515
Accr11g01106 715 SMART arm_5 421 461 IPR000225 GO:0005515
Accr11g01106 715 SMART arm_5 462 504 IPR000225 GO:0005515
Accr11g01106 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Accr11g01106 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Accr11g01106 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Accr11g01106 715 CDD RING-Ubox_PUB 289 341 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g01106 Accr-Chr11 23814425 23816572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g01106 1 714 U-box Gene Family AT1G29340 69.631 0.0 959
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g01106 - - pcin:129285475 1243.8