Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g01098 ATGGCTCAGGCGGCTCCCGCAAATGGAACCCACGAGGTTGTTCTGAACGTCAATGACAAATCCAATCAAGATTCCGGGATATCCGTCTCCGTCCCTTTCTTGCAGAAGTTGGTGGCAGAATTCGCGGGAACATACTTTATGATATTCGCCGGCCAAGCGGCGGTGGTGGTGGACAAGGGCTACGACAGCACTGTAACACATCCTGGGGTTTCCATAGTTTGGGGACTTGTCGTTATGGTTCTTGTTTATTCCGTTGGTCACATCTCTGGTGCTCATTTCAATCCTGCCGTCACTTTGGCTTTTGCTTCTACCAAACGTTTTCCCCTCAAACAGGTACCAGCTTATGTGTTAGTTCAGATTCTGGCATCAACTCTGGCGAGTGGGACTCTGAGACTAATATTTCAAGGAAACGACCACTTCGCAGGAACATTAGTGTCTGGGACGTATCTTCAAGGTTTTGTGGTTGAGTTCATCATCACCTTCTACCTCATGTTTGTCATTTCTGGTGTGGCTACAGATAACAGAGCGATTGGTGAGCTGGCGGGTCTTGCGGTAGGGGCAACCGTGTTGCTTAATGTCATGTTTGCTGGGCCGGTGACCGGAGCGTCGATGAACCCGGCGAGAAGCTTAGGGCCGGCGATTGTGTGGCACAAGTATGATGGAATATGGGTTTACTTGCTAGCACCGGTGGCCGGAGCAGTGGCGGGGGCATGGGTGTATAACATCATAAGGTACACCGACAAGCCAATAAGAGAGATCACAAAGAGTGCTTCTTTCCTCAGAGCCTCAAAGAATTGTGGTTCCCCACAGTGA 813 0.5018 MAQAAPANGTHEVVLNVNDKSNQDSGISVSVPFLQKLVAEFAGTYFMIFAGQAAVVVDKGYDSTVTHPGVSIVWGLVVMVLVYSVGHISGAHFNPAVTLAFASTKRFPLKQVPAYVLVQILASTLASGTLRLIFQGNDHFAGTLVSGTYLQGFVVEFIITFYLMFVISGVATDNRAIGELAGLAVGATVLLNVMFAGPVTGASMNPARSLGPAIVWHKYDGIWVYLLAPVAGAVAGAWVYNIIRYTDKPIREITKSASFLRASKNCGSPQ 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g01098 270 CDD MIP 35 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr11g01098 270 PRINTS Major intrinsic protein family signature 186 208 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr11g01098 270 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr11g01098 270 PRINTS Major intrinsic protein family signature 223 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr11g01098 270 PRINTS Major intrinsic protein family signature 74 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr11g01098 270 PRINTS Major intrinsic protein family signature 155 173 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr11g01098 270 PRINTS Major intrinsic protein family signature 111 130 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr11g01098 270 Pfam Major intrinsic protein 30 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr11g01098 270 NCBIfam MIP family channel protein 39 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr11g01098 270 ProSitePatterns MIP family signature. 92 100 IPR022357 -
Accr11g01098 270 Gene3D Glycerol uptake facilitator protein. 8 255 IPR023271 -
Accr11g01098 270 PANTHER AQUAPORIN NIP2-1 23 261 IPR034294 -
Accr11g01098 270 SUPERFAMILY Aquaporin-like 30 254 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g01098 Accr-Chr11 23545040 23547881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g01098 31 262 Major Intrinsic Protein MIP AT5G37810 59.657 1.18e-96 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g01098 K09874 - gmx:100812577 372.859